RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 ZNF705DP0CH99 300 aaPredicted RBP12.52□□□□□ -0.41
CCNF-201ENST00000293968 ZNF705BP0CI00 300 aaPredicted RBP12.52□□□□□ -0.41
CCNF-201ENST00000293968 CEACAM21Q3KPI0 293 aa12.52□□□□□ -0.41
CCNF-201ENST00000293968 SOX15O60248 233 aa12.52□□□□□ -0.41
CCNF-201ENST00000293968 KCNE4Q8WWG9 221 aa12.52□□□□□ -0.41
CCNF-201ENST00000293968 IMMP1LQ96LU5 166 aa12.52□□□□□ -0.41
CCNF-201ENST00000293968 FGF23Q9GZV9 251 aaPredicted RBP12.52□□□□□ -0.41
CCNF-201ENST00000293968 CLN8Q9UBY8 286 aa12.52□□□□□ -0.41
CCNF-201ENST00000293968 PAGE4O60829 102 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 RHBDL1O75783 438 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 CRYAAP02489 173 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 CEACAM6P40199 344 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TUSC5Q8IXB3 177 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 AGBL5Q8NDL9 886 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 OR10G4Q8NGN3 311 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 OR10G9Q8NGN4 311 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 OR10G7Q8NGN6 311 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TAF15Q92804 592 aaKnown RBP eCLIP12.51□□□□□ -0.41
CCNF-201ENST00000293968 CTDSP1Q9GZU7 261 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 FAM166BA8MTA8 275 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TCAPO15273 167 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 GZMBP10144 247 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TAS2R60P59551 318 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 DAZAP2Q15038 168 aaPredicted RBP12.51□□□□□ -0.41
CCNF-201ENST00000293968 FFAR4Q5NUL3 377 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 LYSMD4Q5XG99 296 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 MCEMP1Q8IX19 187 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 WDR61Q9GZS3 305 aaKnown RBP12.51□□□□□ -0.41
CCNF-201ENST00000293968 PARLQ9H300 379 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 LILRA1O75019 489 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 CXCL12P48061 93 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 GGNQ86UU5 652 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 ZNF664Q8N3J9 261 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 PINX1Q96BK5 328 aaKnown RBP12.51□□□□□ -0.41
CCNF-201ENST00000293968 C12orf49Q9H741 205 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 SRD5A3Q9H8P0 318 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TRBV24-1A0A075B6N3 115 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 RND2P52198 227 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 LRRC75BQ2VPJ9 315 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 FAM78BQ5VT40 261 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 CYB5R2Q6BCY4 276 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 SPINK14Q6IE38 97 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 C1QTNF5Q9BXJ0 243 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TMEM9BQ9NQ34 198 aa12.51□□□□□ -0.41
CCNF-201ENST00000293968 TRAV1-1A0A0B4J248 108 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 IFNL4K9M1U5 179 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 G6PCP35575 357 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 ZNF324BQ6AW86 544 aaPredicted RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 HAPLN4Q86UW8 402 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 RPP25LQ8N5L8 163 aaKnown RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 APOBEC3DQ96AK3 386 aaPredicted RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 PCED1AQ9H1Q7 454 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 DLL3Q9NYJ7 618 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 FREM1Q5H8C1 2179 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 IGKV1-5P01602 117 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 GZMHP20718 246 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 RPL23P62829 140 aaKnown RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 JOSD1Q15040 202 aaPredicted RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 PCSK4Q6UW60 755 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 OR2T10Q8NGZ9 312 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 ZNF320A2RRD8 509 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 ST8SIA5O15466 376 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 SELLP14151 372 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 SERF2P84101 59 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 ZFP36L1Q07352 338 aaKnown RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 IL22RA2Q969J5 263 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 TMEM18Q96B42 140 aa12.5□□□□□ -0.41
CCNF-201ENST00000293968 PHF7Q9BWX1 381 aaPredicted RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 RIMS4Q9H426 269 aaPredicted RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 LIN7CQ9NUP9 197 aaKnown RBP12.5□□□□□ -0.41
CCNF-201ENST00000293968 TRAV24A0A0B4J272 114 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 PDGFBP01127 241 aaPredicted RBP12.49□□□□□ -0.41
CCNF-201ENST00000293968 IGKV1-39P01597 117 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 GYPAP02724 150 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 IGKV1D-39P04432 117 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 CD81P60033 236 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 C3AR1Q16581 482 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 P2RX4Q99571 388 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 DDA1Q9BW61 102 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 REPIN1Q9BWE0 567 aaKnown RBP12.49□□□□□ -0.41
CCNF-201ENST00000293968 PRDM14Q9GZV8 571 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 SYNGR4O95473 234 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 PRSS8Q16651 343 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 LTC4SQ16873 150 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 ZNF295-AS1Q8N0V1 137 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 MBD3L1Q8WWY6 194 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 DNASE2BQ8WZ79 361 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 WDFY3Q8IZQ1 3526 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 IGKV1D-33P01593 117 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 IGKV1-33P01594 117 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 B3GALT5-AS1P59052 145 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 BTNL3Q6UXE8 466 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 ZNF573Q86YE8 665 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 FGFRL1Q8N441 504 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 TMEM204Q9BSN7 226 aa12.49□□□□□ -0.41
CCNF-201ENST00000293968 FAM90A10PA6NDY2 464 aa12.48□□□□□ -0.41
CCNF-201ENST00000293968 FAM90A18PA6NE21 464 aa12.48□□□□□ -0.41
CCNF-201ENST00000293968 FAM90A16PA6NEW6 464 aa12.48□□□□□ -0.41
CCNF-201ENST00000293968 FAM90A20PA6NIJ5 464 aa12.48□□□□□ -0.41
CCNF-201ENST00000293968 FAM90A8PA6NJQ4 464 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms