RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RAMP3O60896 148 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 JTBO76095 146 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 F12P00748 615 aaPredicted RBP9.63□□□□□ -0.87
CUX1-202ENST00000292538 FGF2P09038 288 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 LYL1P12980 280 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 M6PRP20645 277 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 LPAR6P43657 344 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 TMEM267Q0VDI3 215 aaPredicted RBP9.63□□□□□ -0.87
CUX1-202ENST00000292538 SPINK9Q5DT21 86 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 SLC25A24Q6NUK1 477 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 Q6ZRM9 215 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 LRTM2Q8N967 370 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 OR4D5Q8NGN0 318 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 STOML3Q8TAV4 291 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 PLEKHA2Q9HB19 425 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 BARX1Q9HBU1 254 aaPredicted RBP9.63□□□□□ -0.87
CUX1-202ENST00000292538 POMT1Q9Y6A1 747 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 A8MXK9 166 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 C16orf97H3BN30 126 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 GPR137BO60478 399 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 ZP3P21754 424 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 CD40P25942 277 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 EWSR1Q01844 656 aaKnown RBP eCLIP9.62□□□□□ -0.872e-6■■■□□ 16.3
CUX1-202ENST00000292538 ATRAIDQ6UW56 229 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TMEM171Q8WVE6 324 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TCTEX1D2Q8WW35 142 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TMEM56Q96MV1 263 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 SPIN2AQ99865 258 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 SPIN2BQ9BPZ2 258 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TMEM56-RWDD3S4R434 201 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 LRBAP50851 2863 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 BORCS7-ASMTA0A0B4J1R7 106 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 IGSF23A1L1A6 192 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 H0Y980 276 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 IGLV2-14P01704 120 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 UCP1P25874 307 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 G6PCP35575 357 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TNFAIP6P98066 277 aaPredicted RBP9.62□□□□□ -0.87
CUX1-202ENST00000292538 EIF5AL1Q6IS14 154 aaKnown RBP9.62□□□□□ -0.87
CUX1-202ENST00000292538 ZNF880Q6PDB4 577 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TMEM182Q6ZP80 229 aaPredicted RBP9.62□□□□□ -0.87
CUX1-202ENST00000292538 Q6ZRG5 221 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 GCSAMQ8N6F7 178 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 OR5C1Q8NGR4 320 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 LPAR3Q9UBY5 353 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 IGKV1D-17A0A075B6S4 117 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TAAR5O14804 337 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 TMEM50AO95807 157 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 GLRXP35754 106 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 EIF5AP63241 154 aaKnown RBP9.62□□□□□ -0.87
CUX1-202ENST00000292538 SRSF7Q16629 238 aaKnown RBP eCLIP9.62□□□□□ -0.871e-8■■■■■ 28.4
CUX1-202ENST00000292538 Q3ZCU0 254 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 MOB1BQ7L9L4 216 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 SSX9Q7RTT3 188 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 MEGF10Q96KG7 1140 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 CABLES2Q9BTV7 478 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 PLEKHF2Q9H8W4 249 aa9.62□□□□□ -0.87
CUX1-202ENST00000292538 RALYQ9UKM9 306 aaKnown RBP9.62□□□□□ -0.87
CUX1-202ENST00000292538 OOEPA6NGQ2 149 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 KRBOX1C9JBD0 128 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 FAM157CP0CG43 387 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 NFYBP25208 207 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 CCKARP32238 428 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 HSD17B13Q7Z5P4 300 aaPredicted RBP9.61□□□□□ -0.87
CUX1-202ENST00000292538 IFT22Q9H7X7 185 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 HES4Q9HCC6 221 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 PLA2G2EQ9NZK7 142 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 TRBV6-6A0A0A6YYG2 114 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 K7ENP7 123 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 SHOXO15266 292 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 TXNL1O43396 289 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 IGKV1-39P01597 117 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 GYPAP02724 150 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 IGKV1D-39P04432 117 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 CEACAM8P31997 349 aaPredicted RBP9.61□□□□□ -0.87
CUX1-202ENST00000292538 P2RY1P47900 373 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 NHLH1Q02575 133 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 BSPH1Q075Z2 132 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 NMSQ5H8A3 153 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 TMEM108Q6UXF1 575 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 FGFRL1Q8N441 504 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 OR5D13Q8NGL4 314 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 LRRC46Q96FV0 321 aa9.61□□□□□ -0.87
CUX1-202ENST00000292538 MBNL3Q9NUK0 354 aaKnown RBP9.61□□□□□ -0.87
CUX1-202ENST00000292538 CHD3Q12873 2000 aaKnown RBP9.61□□□□□ -0.87
CUX1-202ENST00000292538 F8W036 122 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 SPINT2O43291 252 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 CAMLGP49069 296 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 DYNLT3P51808 116 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 ERVFRD-1P60508 538 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 RND3P61587 244 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 RPL30P62888 115 aaKnown RBP9.6□□□□□ -0.87
CUX1-202ENST00000292538 BLOC1S1P78537 153 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 RUNX1Q01196 453 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 FAM209AQ5JX71 171 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 TMEM252Q8N6L7 170 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 BOD1Q96IK1 185 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 CCL13Q99616 98 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 PIGMQ9H3S5 423 aa9.6□□□□□ -0.87
CUX1-202ENST00000292538 OR4A8P0C604 315 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms