RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SYNGR2O43760 224 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 CTXN2P0C2S0 81 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 PMP22Q01453 160 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 ZNF816Q0VGE8 651 aaPredicted RBP10.78□□□□□ -0.68
LIG1-201ENST00000263274 ELOBQ15370 118 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 OR10V1Q8NGI7 309 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 FAM210BQ96KR6 192 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 CABLES2Q9BTV7 478 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 IL36GQ9NZH8 169 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 TAAR3PQ9P1P4 343 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 LOXL2Q9Y4K0 774 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 CLN3Q13286 438 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 RIPPLY2Q5TAB7 128 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 LHX4Q969G2 390 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 PLSCR2Q9NRY7 297 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 B4GALT7Q9UBV7 327 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 NBEAQ8NFP9 2946 aa10.78□□□□□ -0.68
LIG1-201ENST00000263274 LAMTOR5O43504 91 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 DNPH1O43598 174 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 NXPH2O95156 264 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 CEACAM6P40199 344 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 CEBPDP49716 269 aaPredicted RBP10.77□□□□□ -0.68
LIG1-201ENST00000263274 NMSQ5H8A3 153 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 WDR25Q64LD2 544 aaPredicted RBP10.77□□□□□ -0.68
LIG1-201ENST00000263274 C6orf15Q6UXA7 325 aaPredicted RBP10.77□□□□□ -0.68
LIG1-201ENST00000263274 TIPARPQ7Z3E1 657 aaKnown RBP10.77□□□□□ -0.68
LIG1-201ENST00000263274 CLDND2Q8NHS1 167 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 SNX22Q96L94 193 aa10.77□□□□□ -0.68
LIG1-201ENST00000263274 IDH3GP51553 393 aaPredicted RBP10.77□□□□□ -0.69
LIG1-201ENST00000263274 HOXA4Q00056 320 aaPredicted RBP10.77□□□□□ -0.69
LIG1-201ENST00000263274 FOXO1Q12778 655 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 ADGRG7Q96K78 797 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 TECTBQ96PL2 329 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 PRDM14Q9GZV8 571 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 SLC25A22Q9H936 323 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 DLL3Q9NYJ7 618 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 PRSS50Q9UI38 385 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 MED12LQ86YW9 2145 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 IFNA10P01566 189 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 GNG3P63215 75 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 BAXQ07812 192 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 KHDC3LQ587J8 217 aa10.77□□□□□ -0.69
LIG1-201ENST00000263274 ROS1P08922 2347 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 SMCO3A2RU48 225 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 CLEC18AA5D8T8 446 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 H0Y980 276 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 CDIPTO14735 213 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 NAPSAO96009 420 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 ZNF25P17030 456 aaPredicted RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 PAX9P55771 341 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 ABLIM2Q6H8Q1 611 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 Q6ZSR3 168 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 NUFIP2Q7Z417 695 aaKnown RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 ZNF573Q86YE8 665 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 TMEM105Q8N8V8 129 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 CLEC18CQ8NCF0 446 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 MRPL30Q8TCC3 161 aaKnown RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 SMIM7Q9BQ49 75 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BKO60814 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HSPB1P04792 205 aaKnown RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BJP06899 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 PGA5P0DJD9 388 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BOP23527 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BBP33778 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BDP58876 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BCP62807 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 ARL16Q0P5N6 197 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST2H2BEQ16778 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 C1orf87Q8N0U7 546 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 OR5D13Q8NGL4 314 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BHQ93079 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BNQ99877 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HIST1H2BMQ99879 126 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 AURKAIP1Q9NWT8 199 aaPredicted RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 CHD3Q12873 2000 aaKnown RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 TRAV24A0A0B4J272 114 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 MAP1LC3B2A6NCE7 125 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 SEC14L6B5MCN3 397 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 TRGC1P0CF51 173 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 UCP2P55851 309 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HBG1P69891 147 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 HBG2P69892 147 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 DAZAP2Q15038 168 aaPredicted RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 FAM53AQ6NSI3 398 aaPredicted RBP10.76□□□□□ -0.69
LIG1-201ENST00000263274 OR5A2Q8NGI9 324 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 OR4C12Q96R67 309 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 RAB40CQ96S21 281 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 MAP1LC3BQ9GZQ8 125 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 SH2D2AQ9NP31 389 aa10.76□□□□□ -0.69
LIG1-201ENST00000263274 OR5H1A6NKK0 313 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 TFF1P04155 84 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 SERPINA7P05543 415 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 SOD3P08294 240 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 DEFA4P12838 97 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 OR1C1Q15619 314 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 ZNF506Q5JVG8 444 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 ODF3L1Q8IXM7 274 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 Q8NFD4 153 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 OR2M7Q8NG81 312 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms