RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MPPED1O15442 326 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 LYNX1P0DP58 116 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 LUMP51884 338 aaPredicted RBP14.01□□□□□ -0.17
CLN3-252ENST00000636907 RND3P61587 244 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 SRSF4Q08170 494 aaKnown RBP14.01□□□□□ -0.17
CLN3-252ENST00000636907 TMEM187Q14656 261 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 GNMTQ14749 295 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 SP6Q3SY56 376 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 ASB13Q8WXK3 278 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 C14orf79Q96F83 325 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 TOLLIPQ9H0E2 274 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 BOLA1Q9Y3E2 137 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 HRNRQ86YZ3 2850 aaPredicted RBP14.01□□□□□ -0.17
CLN3-252ENST00000636907 SPINT2O43291 252 aa14□□□□□ -0.17
CLN3-252ENST00000636907 ADAP1O75689 374 aa14□□□□□ -0.17
CLN3-252ENST00000636907 GZMHP20718 246 aa14□□□□□ -0.17
CLN3-252ENST00000636907 MEX3BQ6ZN04 569 aaKnown RBP14□□□□□ -0.17
CLN3-252ENST00000636907 TBC1D26Q86UD7 250 aa14□□□□□ -0.17
CLN3-252ENST00000636907 DTX2Q86UW9 622 aa14□□□□□ -0.17
CLN3-252ENST00000636907 SEC22AQ96IW7 307 aa14□□□□□ -0.17
CLN3-252ENST00000636907 GPHA2Q96T91 129 aa14□□□□□ -0.17
CLN3-252ENST00000636907 PDCD10Q9BUL8 212 aa14□□□□□ -0.17
CLN3-252ENST00000636907 RAB1BQ9H0U4 201 aa14□□□□□ -0.17
CLN3-252ENST00000636907 RAB18Q9NP72 206 aa14□□□□□ -0.17
CLN3-252ENST00000636907 OR6C3Q9NZP0 311 aa14□□□□□ -0.17
CLN3-252ENST00000636907 FBXO9Q9UK97 447 aaPredicted RBP14□□□□□ -0.17
CLN3-252ENST00000636907 IGHV3-43A0A0B4J1X8 118 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 A6NNC1 897 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 OR8U9P0C7N5 309 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 IGHV3-43DP0DP04 118 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 LAMTOR1Q6IAA8 161 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 LYPD2Q6UXB3 125 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 OR8U1Q8NH10 309 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 GRPEL2Q8TAA5 225 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 SUCNR1Q9BXA5 334 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 OR2S2Q9NQN1 319 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 PLSCR3Q9NRY6 295 aa13.99□□□□□ -0.17
CLN3-252ENST00000636907 C3orf85A0A1B0GTC6 90 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 C13orf42A0A1B0GVH6 325 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 C5orf51A6NDU8 294 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 FCN3O75636 299 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 RGS11O94810 467 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 IGLV2-14P01704 120 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 CGB3P0DN86 165 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 CGB7P0DN87 165 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 NDUFB7P17568 137 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 PPP1CCP36873 323 aaKnown RBP13.98□□□□□ -0.17
CLN3-252ENST00000636907 HTD2P86397 168 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 TCF23Q7RTU1 214 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 CMTM1Q8IZ96 169 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 BVESQ8NE79 360 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 GLYATL2Q8WU03 294 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 NINJ1Q92982 152 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 TP53RKQ96S44 253 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 TMEM246Q9BRR3 403 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 UBTD1Q9HAC8 227 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 CALYQ9NYX4 217 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 SLC25A10Q9UBX3 287 aaPredicted RBP13.98□□□□□ -0.17
CLN3-252ENST00000636907 LAMP3Q9UQV4 416 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 RBM7Q9Y580 266 aaKnown RBP13.98□□□□□ -0.17
CLN3-252ENST00000636907 PHF1O43189 567 aaPredicted RBP13.98□□□□□ -0.17
CLN3-252ENST00000636907 ADAM20O43506 726 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 TNFSF12O43508 249 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 HOXB5P09067 269 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 LTC4SQ16873 150 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 C17orf58Q2M2W7 97 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 GSG1LQ6UXU4 331 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 LIAT1Q6ZQX7 453 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 C9orf62Q8N4C0 152 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 MSI2Q96DH6 328 aaKnown RBP13.98□□□□□ -0.17
CLN3-252ENST00000636907 METTL8Q9H825 291 aaKnown RBP13.98□□□□□ -0.17
CLN3-252ENST00000636907 KCNS2Q9ULS6 477 aa13.98□□□□□ -0.17
CLN3-252ENST00000636907 TRGV10A0A0A0MS01 117 aa13.97□□□□□ -0.17
CLN3-252ENST00000636907 MPTX1A8MV57 137 aa13.97□□□□□ -0.17
CLN3-252ENST00000636907 F2RL2O00254 374 aa13.97□□□□□ -0.17
CLN3-252ENST00000636907 PGLYRP1O75594 196 aaPredicted RBP13.97□□□□□ -0.17
CLN3-252ENST00000636907 RP2O75695 350 aa13.97□□□□□ -0.17
CLN3-252ENST00000636907 CTSZQ9UBR2 303 aa13.97□□□□□ -0.17
CLN3-252ENST00000636907 TRAV14DV4A0A0A6YYC5 116 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 LY6HO94772 140 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 OMGP23515 440 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 LRTM2Q8N967 370 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 LHFPL5Q8TAF8 219 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 NEU4Q8WWR8 484 aaPredicted RBP13.96□□□□□ -0.17
CLN3-252ENST00000636907 AKR1E2Q96JD6 320 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 OR10C1Q96KK4 312 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 KAAG1Q9UBP8 84 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 JPT1Q9UK76 154 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 RNF150Q9ULK6 438 aa13.96□□□□□ -0.17
CLN3-252ENST00000636907 KBTBD11-OT1A0A1B0GTJ5 212 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 NDUFB3O43676 98 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 NDUFA2O43678 99 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 S100GP29377 79 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 LOXL3P58215 753 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 DRAM1Q8N682 238 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 CORO2AQ92828 525 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 TMEM222Q9H0R3 208 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 OR2D2Q9H210 308 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 GNG12Q9UBI6 72 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 CLN8Q9UBY8 286 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms