RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SMIM3Q9BZL3 60 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 A0A1B0GWJ7 208 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 CDS2O95674 445 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 UCP1P25874 307 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 HMGN3Q15651 99 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 GFRALQ6UXV0 394 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 OR51H1Q8NH63 302 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 CEP295Q9C0D2 2601 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 TMEM30CPA0ZSE6 113 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 E5RGE8 158 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 NPIPB11E5RHQ5 1161 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 IGLV2-14P01704 120 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 GLRXP35754 106 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 NKX6-1P78426 367 aaPredicted RBP13.15□□□□□ -0.3
CLN3-251ENST00000636853 COL10A1Q03692 680 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 OR4D5Q8NGN0 318 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 COQ2Q96H96 371 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 FBXL17Q9UF56 701 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 NSG2Q9Y328 171 aa13.15□□□□□ -0.3
CLN3-251ENST00000636853 RBM7Q9Y580 266 aaKnown RBP13.15□□□□□ -0.3
CLN3-251ENST00000636853 ICE1Q9Y2F5 2266 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 H0Y980 276 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 ST8SIA3O43173 380 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 ADAM20O43506 726 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 IGHV3-13P01766 116 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 EGR1P18146 543 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 PVALBP20472 110 aaPredicted RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 F2RP25116 425 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 CEACAM6P40199 344 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 MEOX2P50222 304 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 TMEM33P57088 247 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 KLF3P57682 345 aaPredicted RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 NHLH1Q02575 133 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 SMIM21Q3B7S5 101 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 TPRX1Q8N7U7 411 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 BOLLQ8N9W6 283 aaKnown RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 OR1L1Q8NH94 360 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 ERGIC1Q969X5 290 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 BSCL2Q96G97 398 aaPredicted RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 ZDHHC8Q9ULC8 765 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 PPP1R3CQ9UQK1 317 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 RCL1Q9Y2P8 373 aaKnown RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 CACNA1DQ01668 2161 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 MEX3AA1L020 520 aaKnown RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 GFRA3O60609 400 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 OR8U9P0C7N5 309 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 FAM87AP0C7U9 286 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 CCKARP32238 428 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 OR3A1P47881 315 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 FAM53AQ6NSI3 398 aaPredicted RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 OR5D13Q8NGL4 314 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 OR8U1Q8NH10 309 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 TMEM171Q8WVE6 324 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 SNRNP40Q96DI7 357 aaKnown RBP13.14□□□□□ -0.31
CLN3-251ENST00000636853 KCNS2Q9ULS6 477 aa13.14□□□□□ -0.31
CLN3-251ENST00000636853 TAAR5O14804 337 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 SPRY3O43610 288 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 SNAPINO95295 136 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 S100GP29377 79 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 GABRA2P47869 451 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 MZT1Q08AG7 82 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 C3orf36Q3SXR2 165 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 SLC35E4Q6ICL7 350 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 CD177Q8N6Q3 437 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 OR1S2Q8NGQ3 325 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 PRR7Q8TB68 274 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 OR2V2Q96R30 315 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 ESRP2Q9H6T0 727 aaKnown RBP13.13□□□□□ -0.31
CLN3-251ENST00000636853 PLEKHA2Q9HB19 425 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 ASF1BQ9NVP2 202 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 KCNIP1Q9NZI2 227 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 C12orf77C9JDV5 145 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 PSG2P11465 335 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 CD200P41217 278 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 RPL35P42766 123 aaKnown RBP13.13□□□□□ -0.31
CLN3-251ENST00000636853 GLIPR1P48060 266 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 MRGPRDQ8TDS7 321 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 SEC11CQ9BY50 192 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 POMT1Q9Y6A1 747 aa13.13□□□□□ -0.31
CLN3-251ENST00000636853 PCNX1Q96RV3 2341 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 NXPH3O95157 252 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 AKR1D1P51857 326 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 POLR2GP62487 172 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLN3-251ENST00000636853 NMSQ5H8A3 153 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 CXorf66Q5JRM2 361 aaPredicted RBP13.12□□□□□ -0.31
CLN3-251ENST00000636853 KRBOX4Q5JUW0 171 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 ARL11Q969Q4 196 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 ZFP57Q9NU63 452 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 MSRB2Q9Y3D2 182 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 PTPRQQ9UMZ3 2332 aa13.12□□□□□ -0.31
CLN3-251ENST00000636853 IGHV3OR15-7A0A075B7D8 119 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 ADCYAP1P18509 176 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 VDAC1P21796 283 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 CD40P25942 277 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 PAX6P26367 422 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 NKX2-1P43699 371 aaPredicted RBP13.11□□□□□ -0.31
CLN3-251ENST00000636853 GUCA2BQ16661 112 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 IL34Q6ZMJ4 242 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 MRGPRGQ86SM5 289 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms