RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CCL28Q9NRJ3 127 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 OR2W1Q9Y3N9 320 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 HELZ2Q9BYK8 2649 aaKnown RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 NPIPB11E5RHQ5 1161 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 HSD17B6O14756 317 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 GOSR1O95249 250 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 IGHV4-39P01824 125 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 CTSDP07339 412 aaPredicted RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 GZMHP20718 246 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 PIGPP57054 158 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 ZNF841Q6ZN19 808 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 ZNF818PQ6ZRF7 136 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 SLC5A7Q9GZV3 580 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 CALYQ9NYX4 217 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 C14orf166Q9Y224 244 aaKnown RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 SNRPGP15A8MWD9 76 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 OR8U9P0C7N5 309 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 RPL31P62899 125 aaKnown RBP16.61■□□□□ 0.25
CLN3-250ENST00000636839 TMEM128Q5BJH2 165 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 LRRC10Q5BKY1 277 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 TMEM200BQ69YZ2 307 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 LYG2Q86SG7 212 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 OR8U1Q8NH10 309 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 LEAP2Q969E1 77 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 WDR89Q96FK6 387 aaPredicted RBP16.61■□□□□ 0.25
CLN3-250ENST00000636839 SCGB3A2Q96PL1 93 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 RSRP1Q9BUV0 290 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 OR6C3Q9NZP0 311 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 RNF150Q9ULK6 438 aa16.61■□□□□ 0.25
CLN3-250ENST00000636839 SPINT2O43291 252 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 CCL3L1P16619 93 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 DHODHQ02127 395 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 KCNJ8Q15842 424 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 HIST2H2BCQ6DN03 193 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 SLC2A9Q9NRM0 540 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 DOPEY2Q9Y3R5 2298 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 TRGV10A0A0A0MS01 117 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 TNFSF12O43508 249 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 NDUFA2O43678 99 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 SIX6O95475 246 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 IGLV2-14P01704 120 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 UCP3P55916 312 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 LOXL3P58215 753 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 SP6Q3SY56 376 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 ZFAND1Q8TCF1 268 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 RAB1CQ92928 201 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 DMRTB1Q96MA1 342 aa16.6■□□□□ 0.25
CLN3-250ENST00000636839 MALRD1Q5VYJ5 2156 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 KBTBD11-OT1A0A1B0GTJ5 212 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 SULT1A3P0DMM9 295 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 SULT1A4P0DMN0 295 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 TMEM33P57088 247 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 KRTAP10-9P60411 292 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 ABCA11PQ4W5N1 156 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 CD276Q5ZPR3 534 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 SLC38A6Q8IZM9 456 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 NCOR1P1Q9H4R4 102 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 CLN8Q9UBY8 286 aa16.59■□□□□ 0.25
CLN3-250ENST00000636839 SMLR1H3BR10 107 aa16.58■□□□□ 0.25
CLN3-250ENST00000636839 ECI1P42126 302 aa16.58■□□□□ 0.25
CLN3-250ENST00000636839 ANKRD55Q3KP44 614 aa16.58■□□□□ 0.25
CLN3-250ENST00000636839 FAHD2BQ6P2I3 314 aaPredicted RBP16.58■□□□□ 0.25
CLN3-250ENST00000636839 ZNF554Q86TJ5 538 aa16.58■□□□□ 0.25
CLN3-250ENST00000636839 FAHD2AQ96GK7 314 aa16.58■□□□□ 0.25
CLN3-250ENST00000636839 TIMD4Q96H15 378 aa16.58■□□□□ 0.25
CLN3-250ENST00000636839 YLPM1P49750 1951 aaKnown RBP16.58■□□□□ 0.25
CLN3-250ENST00000636839 SFT2D2O95562 160 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 FSTL3O95633 263 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 WNT2P09544 360 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 TRAPPC2P0DI81 140 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 TRAPPC2BP0DI82 140 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 TAS2R31P59538 309 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 PRAMEF5Q5TYX0 476 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 TRAT1Q6PIZ9 186 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 FAM185AQ8N0U4 392 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 C12orf45Q8N5I9 185 aaPredicted RBP16.58■□□□□ 0.24
CLN3-250ENST00000636839 DRAXINQ8NBI3 349 aaPredicted RBP16.58■□□□□ 0.24
CLN3-250ENST00000636839 RTN4IP1Q8WWV3 396 aaPredicted RBP16.58■□□□□ 0.24
CLN3-250ENST00000636839 MGAT4CQ9UBM8 478 aa16.58■□□□□ 0.24
CLN3-250ENST00000636839 NBPF19A0A087WUL8 3843 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 TEX13DA0A0J9YY54 714 aaPredicted RBP16.57■□□□□ 0.24
CLN3-250ENST00000636839 hADV38S2A0JD32 116 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 CRYM-AS1A6NIL9 109 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 PHF1O43189 567 aaPredicted RBP16.57■□□□□ 0.24
CLN3-250ENST00000636839 HNRNPCP07910 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-250ENST00000636839 ZNF134P52741 427 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 HTD2P86397 168 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 KCTD9Q7L273 389 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 OR2AK2Q8NG84 335 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 CORO2AQ92828 525 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 GNG12Q9UBI6 72 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 RBM7Q9Y580 266 aaKnown RBP16.57■□□□□ 0.24
CLN3-250ENST00000636839 A0A1W2PPE3 182 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 F2RL2O00254 374 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 NFYBP25208 207 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 CD34P28906 385 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 GPR6P46095 362 aaPredicted RBP16.57■□□□□ 0.24
CLN3-250ENST00000636839 LUMP51884 338 aaPredicted RBP16.57■□□□□ 0.24
CLN3-250ENST00000636839 DCAF12L2Q5VW00 463 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 MITD1Q8WV92 249 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms