RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 LPCAT3Q6P1A2 487 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 PRSS57Q6UWY2 283 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 HEPN1Q6WQI6 88 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 OR52M1Q8NGK5 317 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 ZFAND1Q8TCF1 268 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 FAM216AQ8WUB2 273 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 EDARADDQ8WWZ3 215 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 MOB3AQ96BX8 217 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 DMRTB1Q96MA1 342 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 TMPRSS13Q9BYE2 586 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 RDH8Q9NYR8 311 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 OR2W1Q9Y3N9 320 aa12.74□□□□□ -0.37
UPF1-206ENST00000598471 RBM7Q9Y580 266 aaKnown RBP12.74□□□□□ -0.37
UPF1-206ENST00000598471 SETXQ7Z333 2677 aaKnown RBP12.73□□□□□ -0.37
UPF1-206ENST00000598471 IGHV4-61A0A0C4DH41 118 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 OR5H14A6NHG9 310 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 ARPC1BO15143 372 aaKnown RBP12.73□□□□□ -0.37
UPF1-206ENST00000598471 ENSAO43768 121 aaKnown RBP12.73□□□□□ -0.37
UPF1-206ENST00000598471 RBP4P02753 201 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 CCL3L1P16619 93 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 USF1P22415 310 aaPredicted RBP12.73□□□□□ -0.37
UPF1-206ENST00000598471 LUMP51884 338 aaPredicted RBP12.73□□□□□ -0.37
UPF1-206ENST00000598471 RAG2P55895 527 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 UCP3P55916 312 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 Q5PR19 223 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 PRAMEF5Q5TYX0 476 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 AADACL3Q5VUY0 350 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 LY6G5BQ8NDX9 201 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 OR52L2PQ8NGH6 319 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 MARCH1Q8TCQ1 289 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 TOMM40LQ969M1 308 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 UPRTQ96BW1 309 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 MARVELD1Q9BSK0 173 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 TOLLIPQ9H0E2 274 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 FXYD6Q9H0Q3 95 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 GFOD1Q9NXC2 390 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 C14orf166Q9Y224 244 aaKnown RBP12.73□□□□□ -0.37
UPF1-206ENST00000598471 SPG11Q96JI7 2443 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 UNC79Q9P2D8 2635 aa12.73□□□□□ -0.37
UPF1-206ENST00000598471 IGHV3-43A0A0B4J1X8 118 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 C22orf46C9J442 243 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 YPEL1O60688 119 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 PEX14O75381 377 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 IGHV3-43DP0DP04 118 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 OMGP23515 440 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 NFYBP25208 207 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 PPP1CCP36873 323 aaKnown RBP12.72□□□□□ -0.37
UPF1-206ENST00000598471 TAS2R31P59538 309 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 GNMTQ14749 295 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 Q6ZNX1 250 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 SLC38A6Q8IZM9 456 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 OR10V1Q8NGI7 309 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 YPEL2Q96QA6 119 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 ONECUT1Q9UBC0 465 aa12.72□□□□□ -0.37
UPF1-206ENST00000598471 ARID1AO14497 2285 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 C17orf98A8MV24 154 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 KIAA1324LA8MWY0 1029 aaPredicted RBP12.71□□□□□ -0.37
UPF1-206ENST00000598471 M0R1W7 72 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 PRAF2O60831 178 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 S100GP29377 79 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 DLX6P56179 175 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 LOXL3P58215 753 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 Q3ZCU0 254 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 ABCA11PQ4W5N1 156 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 LY6G6FQ5SQ64 297 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 TMED4Q7Z7H5 227 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 KIR3DL3Q8N743 410 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 OR2AK2Q8NG84 335 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 SECTM1Q8WVN6 248 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 ZNF486Q96H40 463 aaPredicted RBP12.71□□□□□ -0.37
UPF1-206ENST00000598471 SLC5A7Q9GZV3 580 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 GPR132Q9UNW8 380 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 FLVCR2Q9UPI3 526 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 VSIG4Q9Y279 399 aa12.71□□□□□ -0.37
UPF1-206ENST00000598471 ITGB1BP1O14713 200 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 SLC22A5O76082 557 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 CTSDP07339 412 aaPredicted RBP12.7□□□□□ -0.38
UPF1-206ENST00000598471 RAB7AP51149 207 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 RAB25P57735 213 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 ERVFRD-1P60508 538 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 LCN2P80188 198 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 MORN2Q502X0 79 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 C11orf88Q6PI97 169 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 BTNL3Q6UXE8 466 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 CCDC71LQ8N9Z2 235 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 MRGPRFQ96AM1 343 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 DACT3Q96B18 629 aaPredicted RBP12.7□□□□□ -0.38
UPF1-206ENST00000598471 KCNS2Q9ULS6 477 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 SESN1Q9Y6P5 492 aa12.7□□□□□ -0.38
UPF1-206ENST00000598471 IGHV2-70DA0A0C4DH43 119 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 OR8U9P0C7N5 309 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 IGHV1-8P0DP01 117 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 ZFP36P26651 326 aaKnown RBP12.69□□□□□ -0.38
UPF1-206ENST00000598471 MECP2P51608 486 aaKnown RBP12.69□□□□□ -0.38
UPF1-206ENST00000598471 UBE2MP61081 183 aaKnown RBP12.69□□□□□ -0.38
UPF1-206ENST00000598471 BAMBIQ13145 260 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 CMTM1Q8IZ96 169 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 OR8U1Q8NH10 309 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 RSRP1Q9BUV0 290 aa12.69□□□□□ -0.38
UPF1-206ENST00000598471 ALX4Q9H161 411 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms