RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 A0A0A6YYD4 124 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 CCRL2O00421 344 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 SLC31A2O15432 143 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 AMY1AP04745 511 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 AMY2AP04746 511 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 CSF1P09603 554 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 ARSBP15848 533 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 ABCA11PQ4W5N1 156 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 SLC25A48Q6ZT89 311 aaKnown RBP12.04□□□□□ -0.48
TRIM28-205ENST00000595028 C6orf201Q7Z4U5 140 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 OR10V1Q8NGI7 309 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 LPAR5Q9H1C0 372 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 KCNIP1Q9NZI2 227 aa12.04□□□□□ -0.48
TRIM28-205ENST00000595028 RRP15Q9Y3B9 282 aaKnown RBP12.04□□□□□ -0.48
TRIM28-205ENST00000595028 IGHV1-3A0A0C4DH29 117 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 IGKV1D-33P01593 117 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 IGKV1-33P01594 117 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 TMEM11P17152 192 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 REG1BP48304 166 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 ZNF137PP52743 207 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 CLDN12P56749 244 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 HES1Q14469 280 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 UBE2UQ5VVX9 321 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 CD200R1LQ6Q8B3 271 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 IZUMO1Q8IYV9 350 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 ST6GALNAC6Q969X2 333 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 URM1Q9BTM9 101 aaKnown RBP12.03□□□□□ -0.48
TRIM28-205ENST00000595028 FAAP24Q9BTP7 215 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 JPT1Q9UK76 154 aa12.03□□□□□ -0.48
TRIM28-205ENST00000595028 TRDV1A0A1B0GX56 115 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 SH2D7A6NKC9 451 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-205ENST00000595028 FOXI3A8MTJ6 420 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-205ENST00000595028 NAPSAO96009 420 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 GAPDHP04406 335 aaKnown RBP12.02□□□□□ -0.49
TRIM28-205ENST00000595028 CD28P10747 220 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 BLVRBP30043 206 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-205ENST00000595028 GNMTQ14749 295 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 HMGN3Q15651 99 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 Q6ZPA2 131 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 MOB1BQ7L9L4 216 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 SPARTQ8N0X7 666 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 FAM89BQ8N5H3 189 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 OR51D1Q8NGF3 324 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 RTN4IP1Q8WWV3 396 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-205ENST00000595028 FAM3DQ96BQ1 224 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 OR2S2Q9NQN1 319 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 V9GY05 133 aa12.02□□□□□ -0.49
TRIM28-205ENST00000595028 TRAV1-2A0A0B4J238 106 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 SHISA3A0PJX4 238 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 TXNL1O43396 289 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 LPLP06858 475 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 MYL9P24844 172 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 RANBP1P43487 201 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 PSMD7P51665 324 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 ZNF134P52741 427 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 HTD2P86397 168 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 EBI3Q14213 229 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 CT45A1Q5HYN5 189 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 STEAP3Q658P3 488 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 ZNF880Q6PDB4 577 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 C5orf24Q7Z6I8 188 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 MOB3BQ86TA1 216 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 OR52L2PQ8NGH6 319 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 CT45A3Q8NHU0 189 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 FAM110DQ8TAY7 271 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-205ENST00000595028 FCGR1BQ92637 280 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 ABHD14AQ9BUJ0 271 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 YTHDF1Q9BYJ9 559 aaKnown RBP12.01□□□□□ -0.49
TRIM28-205ENST00000595028 CHMP1AQ9HD42 196 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-205ENST00000595028 PLEKHJ1Q9NW61 149 aa12.01□□□□□ -0.49
TRIM28-205ENST00000595028 IGHV3-72A0A0B4J1Y9 119 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 PDCD5O14737 125 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 LDLRAD4O15165 306 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 SOCS1O15524 211 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 FGF16O43320 207 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 GALP22466 123 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 PSMB9P28065 219 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 PPP1CCP36873 323 aaKnown RBP12□□□□□ -0.49
TRIM28-205ENST00000595028 OR10A3P58181 314 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 HNF4GQ14541 408 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 MORN2Q502X0 79 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 C9orf152Q5JTZ5 239 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 HES5Q5TA89 166 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 NDUFA11Q86Y39 141 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 TGIF2LXQ8IUE1 241 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 LYG1Q8N1E2 194 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 Q8N6K4 173 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 C5orf56Q8N8D9 126 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 GALMQ96C23 342 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 CITED2Q99967 270 aaPredicted RBP12□□□□□ -0.49
TRIM28-205ENST00000595028 ABRACLQ9P1F3 81 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 STEAP1Q9UHE8 339 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 HSF4Q9ULV5 492 aa12□□□□□ -0.49
TRIM28-205ENST00000595028 NOTCH3Q9UM47 2321 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 TRBV6-6A0A0A6YYG2 114 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 TMEM272A0A1B0GTI8 110 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 ADARB2-AS1A8MUL3 147 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 YPEL1O60688 119 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 RGS11O94810 467 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 VEGFCP49767 419 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms