RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ZNF525Q8N782 197 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 TMEM52Q8NDY8 209 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 CCDC54Q8NEL0 328 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 SLC26A10Q8NG04 563 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 OR5L2Q8NGL0 311 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 MFSD8Q8NHS3 518 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 FAM213BQ8TBF2 198 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 RNF133Q8WVZ7 376 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 FAM168AQ92567 244 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 TAF15Q92804 592 aaKnown RBP eCLIP3.54□□□□□ -1.84
LIG3-211ENST00000588713 ACY3Q96HD9 319 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 C1orf147Q96MC9 270 aaPredicted RBP3.54□□□□□ -1.84
LIG3-211ENST00000588713 GNRHR2Q96P88 292 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 DGAT2Q96PD7 388 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 JMJD8Q96S16 334 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BLQ99880 126 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 C20orf24Q9BUV8 137 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 SUCNR1Q9BXA5 334 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 TTTY12Q9BZ98 90 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 TBL1XR1Q9BZK7 514 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 TXNIPQ9H3M7 391 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 PTGES2Q9H7Z7 377 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 ZDHHC11Q9H8X9 412 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 ZMAT3Q9HA38 289 aaKnown RBP3.54□□□□□ -1.84
LIG3-211ENST00000588713 CDH20Q9HBT6 801 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 DECR2Q9NUI1 292 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 FAM206AQ9NX38 181 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 EHFQ9NZC4 300 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 JKAMPQ9P055 326 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 DKKL1Q9UK85 242 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 PITPNC1Q9UKF7 332 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 ZNF346Q9UL40 294 aaKnown RBP3.54□□□□□ -1.84
LIG3-211ENST00000588713 MRPS28Q9Y2Q9 187 aaKnown RBP3.54□□□□□ -1.84
LIG3-211ENST00000588713 EMC9Q9Y3B6 208 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 FBXO7Q9Y3I1 522 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 CBY1Q9Y3M2 126 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 MMP24Q9Y5R2 645 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 HEATR5AQ86XA9 2040 aa3.54□□□□□ -1.84
LIG3-211ENST00000588713 KIAA1549Q9HCM3 1950 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 A0A0G2JMM0 328 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 LOC102723971A0A1B0GUV8 181 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 A0A1W2PPB8 328 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DUXBA0A1W2PPF3 345 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FAM230AA0A1W2PPH8 454 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 A0A1W2PRS3 328 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 RBFOX3A6NFN3 312 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FRG2CA6NGY1 282 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 A8MWP6 167 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 KIR3DP1A8MWS1 328 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FTCDNL1E5RQL4 147 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 H0YGG7 62 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 C3orf84H3BNL1 204 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 H3BSH0 61 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 M0QZK8 103 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 P2RY10O00398 339 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 HSD17B6O14756 317 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 PHOX2AO14813 284 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 GGCTO75223 188 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 SCAF4O95104 1147 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 LY86O95711 162 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 MPIG6BO95866 241 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 GCGP01275 180 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 IGHG3P01860 377 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OPN1MWP04001 364 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 HPNP05981 417 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 H2BFMP0C1H6 154 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 METTL15P1P0C7V9 234 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CT45A8P0DMV1 189 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CT45A9P0DMV2 189 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OPN1MW2P0DN77 364 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OPN1MW3P0DN78 364 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR5H8P0DN80 308 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 COX5BP10606 129 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 MMP9P14780 707 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DAOP14920 347 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FABP4P15090 132 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CTLA4P16410 223 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ZNF823P16415 610 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 SERPINA2P20848 420 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DTYMKP23919 212 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DUSP1P28562 367 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 IL2RGP31785 369 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CCKARP32238 428 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 SFTPDP35247 375 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 TIMP3P35625 211 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ZNF93P35789 620 aaPredicted RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 TAGLN2P37802 199 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 APOBEC1P41238 236 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 RPS27P42677 84 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR3A2P47893 321 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 PDLIM4P50479 330 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DAP3P51398 398 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 CCR4P51679 360 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DSCR9P59020 149 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ERVFRD-1P60508 538 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ARF3P61204 181 aaPredicted RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 EWSR1Q01844 656 aaKnown RBP eCLIP3.53□□□□□ -1.84
LIG3-211ENST00000588713 BAXQ07812 192 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FUT7Q11130 342 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 PRDX4Q13162 271 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms