RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 SLC2A8Q9NY64 477 aa12.73□□□□□ -0.37
SS18-216ENST00000580751 TAS2R3Q9NYW6 316 aa12.73□□□□□ -0.37
SS18-216ENST00000580751 KCNIP1Q9NZI2 227 aa12.73□□□□□ -0.37
SS18-216ENST00000580751 TRAV40A0A0B4J280 105 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 C17orf98A8MV24 154 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 TRDCB7Z8K6 153 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 DISC1C4P0D8 188 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 FSHBP01225 129 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 CD3DP04234 171 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 SRD5A1P18405 259 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 PRTN3P24158 256 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 SLC6A1P30531 599 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 GLP1RP43220 463 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 OR3A3P47888 321 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 DLX6P56179 175 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 OXA1LQ15070 435 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 TMEM30BQ3MIR4 351 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 GPR157Q5UAW9 335 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 NCR3LG1Q68D85 454 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 TMEM17Q86X19 198 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 GVQW1Q8N7I0 195 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 Q8N7P7 452 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 OR4A4PQ8NGN8 299 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 OR5H2Q8NGV7 314 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 DYRK2Q92630 601 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 PRRT1Q99946 306 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 HDHD3Q9BSH5 251 aaPredicted RBP12.72□□□□□ -0.37
SS18-216ENST00000580751 C11orf54Q9H0W9 315 aaPredicted RBP12.72□□□□□ -0.37
SS18-216ENST00000580751 SIRT7Q9NRC8 400 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 NECAP2Q9NVZ3 263 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 SCP2D1Q9UJQ7 156 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 TRAPPC2LQ9UL33 140 aa12.72□□□□□ -0.37
SS18-216ENST00000580751 JMJD1CQ15652 2540 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 MEX3AA1L020 520 aaKnown RBP12.71□□□□□ -0.37
SS18-216ENST00000580751 MEIS3P1A6NDR6 274 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 ZNF729A6NN14 1252 aaPredicted RBP12.71□□□□□ -0.37
SS18-216ENST00000580751 IFNA6P05013 189 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 ARPC4P59998 168 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 ERVFRD-1P60508 538 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 CDK10Q15131 360 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 OVCH2Q7RTZ1 564 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 FAM216AQ8WUB2 273 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 SLC25A21Q9BQT8 299 aaPredicted RBP12.71□□□□□ -0.37
SS18-216ENST00000580751 NUP50Q9UKX7 468 aa12.71□□□□□ -0.37
SS18-216ENST00000580751 FAM240BA0A1B0GVZ2 78 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 NPIPB11E5RHQ5 1161 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 FABP7O15540 132 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 FAM157CP0CG43 387 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 HLA-DMAP28067 261 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 HRH1P35367 487 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 ECI1P42126 302 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 BPIFB3P59826 476 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 HLA-DRB3P79483 266 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 HMGN3Q15651 99 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 KLF17Q5JT82 389 aaPredicted RBP12.7□□□□□ -0.38
SS18-216ENST00000580751 C11orf42Q8N5U0 333 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 OR4C16Q8NGL9 310 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 OR13A1Q8NGR1 328 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 ENKURQ8TC29 256 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 LHX4Q969G2 390 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 DPAGT1Q9H3H5 408 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 LINC00574Q9H8X3 128 aa12.7□□□□□ -0.38
SS18-216ENST00000580751 ZNF230Q9UIE0 474 aaPredicted RBP12.7□□□□□ -0.38
SS18-216ENST00000580751 KBTBD11-OT1A0A1B0GTJ5 212 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 FCER2P06734 321 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 IGHV1-8P0DP01 117 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 IGHV4-38-2P0DP08 117 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 HOXB4P17483 251 aaPredicted RBP12.69□□□□□ -0.38
SS18-216ENST00000580751 EPHA1P21709 976 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 RFX2P48378 723 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 RAG2P55895 527 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 TRIM16LQ309B1 348 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 KIAA2026Q5HYC2 2103 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 OR52W1Q6IF63 320 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 DHRS11Q6UWP2 260 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 HEPN1Q6WQI6 88 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 MRGPRDQ8TDS7 321 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 TNFRSF14Q92956 283 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 CABLES2Q9BTV7 478 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 HEXA-AS1Q9H8Q6 139 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 CALYQ9NYX4 217 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 SLC23A1Q9UHI7 598 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 SESN1Q9Y6P5 492 aa12.69□□□□□ -0.38
SS18-216ENST00000580751 ZFHX3Q15911 3703 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 CENPVL3A0A0U1RRI6 287 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 LINC00854A0A1B0GVQ3 168 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 AMY2AP04746 511 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 ZNF735P0CB33 412 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 OR5H8P0DN80 308 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 RBMS2Q15434 407 aaKnown RBP12.68□□□□□ -0.38
SS18-216ENST00000580751 PLA1AQ53H76 456 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 ZNF782Q6ZMW2 699 aaPredicted RBP12.68□□□□□ -0.38
SS18-216ENST00000580751 Q6ZPA2 131 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 NRARPQ7Z6K4 114 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 OR10A7Q8NGE5 316 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 OR6F1Q8NGZ6 308 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 CCDC107Q8WV48 283 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 GIMAP1Q8WWP7 306 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 SCGB3A2Q96PL1 93 aa12.68□□□□□ -0.38
SS18-216ENST00000580751 TAF9BQ9HBM6 251 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms