RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 NUFIP2Q7Z417 695 aaKnown RBP9.85□□□□□ -0.83
CLN3-238ENST00000569430 GPR146Q96CH1 333 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 ZNF837Q96EG3 531 aaPredicted RBP9.85□□□□□ -0.83
CLN3-238ENST00000569430 ANGPTL4Q9BY76 406 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 LRRC3CA6NJW4 275 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 IGHV3-13P01766 116 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 IGHV3-7P01780 117 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 CCL3P10147 92 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 CA6P23280 308 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 CNN1P51911 297 aaKnown RBP9.85□□□□□ -0.83
CLN3-238ENST00000569430 ERVFC1-1P60608 527 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 FOXO1Q12778 655 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 OR4X1Q8NH49 305 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 SGMS2Q8NHU3 365 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 DEFB108AA8MXU0 73 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 DMDP11532 3685 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CRISP2P16562 243 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CCKARP32238 428 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 DSCR4P56555 118 aaPredicted RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 SPEM2Q0P670 501 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CXorf67Q86X51 503 aaPredicted RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 ZNF573Q86YE8 665 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 TMEM183AQ8IXX5 376 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 RCC1LQ96I51 464 aaKnown RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 AP1S3Q96PC3 154 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CRISPLD2Q9H0B8 497 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 RPH3ALQ9UNE2 315 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 LOC102723971A0A1B0GUV8 181 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 GRIFINA4D1Z8 144 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 EPOPA6NHQ4 379 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CBR3O75828 277 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 ACTL6BO94805 426 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CDC34P49427 236 aaPredicted RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 RHBDD2Q6NTF9 364 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 LINC00696Q6ZRV3 163 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CLDND2Q8NHS1 167 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 RIMS4Q9H426 269 aaPredicted RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 SEBOXQ9HB31 216 aaPredicted RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 FBLN5Q9UBX5 448 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 CLN8Q9UBY8 286 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 NAT8BQ9UHF3 227 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 A0A0J9YW62 118 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 TCF21O43680 179 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 IGHV2-5P01817 119 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 AMTP48728 403 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 PHYHD1Q5SRE7 291 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 C1orf53Q5VUE5 145 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 FAM89BQ8N5H3 189 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 KDF1Q8NAX2 398 aaPredicted RBP9.84□□□□□ -0.83
CLN3-238ENST00000569430 HIPK2Q9H2X6 1198 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 B3GAT1Q9P2W7 334 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 PLXNA2O75051 1894 aa9.84□□□□□ -0.83
CLN3-238ENST00000569430 THBS3P49746 956 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 TCL1AP56279 114 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.83□□□□□ -0.84
CLN3-238ENST00000569430 KIAA1671Q9BY89 1806 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 PMS2P1A4D2B8 440 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 RPL36A-HNRNPH2H7BZ11 118 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 RPP30P78346 268 aaKnown RBP9.83□□□□□ -0.84
CLN3-238ENST00000569430 LPAL2Q16609 132 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 TMEM183BQ1AE95 376 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 GUSBP11Q6P575 273 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 D2HGDHQ8N465 521 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 OR2V1Q8NHB1 315 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 LYZL4Q96KX0 146 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 GLRX2Q9NS18 164 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 OR2W1Q9Y3N9 320 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 LRP5LA4QPB2 252 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 GCGP01275 180 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 HNRNPA3P51991 378 aaKnown RBP9.83□□□□□ -0.84
CLN3-238ENST00000569430 PSG4Q00888 419 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 VAMP3Q15836 100 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 BTNL3Q6UXE8 466 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 TIPARPQ7Z3E1 657 aaKnown RBP9.83□□□□□ -0.84
CLN3-238ENST00000569430 AGBL5Q8NDL9 886 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 IFI44Q8TCB0 444 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 ABHD3Q8WU67 409 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 APH1AQ96BI3 265 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 MSI2Q96DH6 328 aaKnown RBP9.83□□□□□ -0.84
CLN3-238ENST00000569430 MRPL13Q9BYD1 178 aaKnown RBP9.83□□□□□ -0.84
CLN3-238ENST00000569430 COL4A3Q01955 1670 aa9.83□□□□□ -0.84
CLN3-238ENST00000569430 IGHV3-43A0A0B4J1X8 118 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 IGHV1OR15-9A0A0B4J2B8 117 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 CBY3A6NI87 242 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 RRP8O43159 456 aaKnown RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 PGLYRP1O75594 196 aaPredicted RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 NDUFB4O95168 129 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 HRASP01112 189 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 RPLP1P05386 114 aaKnown RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 IGHV3-43DP0DP04 118 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 OR10J1P30954 320 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 SLC35B1P78383 322 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 ARG2P78540 354 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 FAM27BQ5VT28 67 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 ETFRF1Q6IPR1 90 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 OR10D3Q8NH80 312 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 RHBDD1Q8TEB9 315 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 C10orf35Q96D05 121 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 PARLQ9H300 379 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms