RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FAM53AQ6NSI3 398 aaPredicted RBP17.04■□□□□ 0.32
CLN3-230ENST00000568076 ASCL5Q7RTU5 278 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 C1orf174Q8IYL3 243 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 LYRM2Q9NU23 88 aaPredicted RBP17.04■□□□□ 0.32
CLN3-230ENST00000568076 M0R1B8 84 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 PITX3O75364 302 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 SEC11BP0C7V7 166 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 SPP1P10451 314 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 OR3A1P47881 315 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 Q6ZRG5 221 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 SH3BGRL3Q9H299 93 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 PARP11Q9NR21 331 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 KCNS2Q9ULS6 477 aa17.03■□□□□ 0.32
CLN3-230ENST00000568076 RBM7Q9Y580 266 aaKnown RBP17.03■□□□□ 0.32
CLN3-230ENST00000568076 PVALBP20472 110 aaPredicted RBP17.02■□□□□ 0.32
CLN3-230ENST00000568076 BLOC1S1P78537 153 aa17.02■□□□□ 0.32
CLN3-230ENST00000568076 IZUMO4Q1ZYL8 232 aa17.02■□□□□ 0.32
CLN3-230ENST00000568076 EIF2S3LQ2VIR3 472 aaKnown RBP17.02■□□□□ 0.32
CLN3-230ENST00000568076 TMEM252Q8N6L7 170 aa17.02■□□□□ 0.32
CLN3-230ENST00000568076 OR2Z1Q8NG97 314 aa17.02■□□□□ 0.32
CLN3-230ENST00000568076 DUSP13Q9UII6 198 aa17.02■□□□□ 0.32
CLN3-230ENST00000568076 RNF115Q9Y4L5 304 aa17.02■□□□□ 0.32
CLN3-230ENST00000568076 EPHA1P21709 976 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 CEACAM8P31997 349 aaPredicted RBP17.02■□□□□ 0.31
CLN3-230ENST00000568076 COL10A1Q03692 680 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 ZNF585BQ52M93 769 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 Q6ZRM9 215 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 DRAM1Q8N682 238 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 LRRC29Q8WV35 223 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 PLEKHF2Q9H8W4 249 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 KCNIP1Q9NZI2 227 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 FAM96BQ9Y3D0 163 aa17.02■□□□□ 0.31
CLN3-230ENST00000568076 KIAA1324LA8MWY0 1029 aaPredicted RBP17.01■□□□□ 0.31
CLN3-230ENST00000568076 ATG12O94817 140 aa17.01■□□□□ 0.31
CLN3-230ENST00000568076 MUC1P15941 1255 aaPredicted RBP17.01■□□□□ 0.31
CLN3-230ENST00000568076 LYPD6BQ8NI32 183 aa17.01■□□□□ 0.31
CLN3-230ENST00000568076 FAM57AQ8TBR7 257 aa17.01■□□□□ 0.31
CLN3-230ENST00000568076 TMEM171Q8WVE6 324 aa17.01■□□□□ 0.31
CLN3-230ENST00000568076 C17orf50Q8WW18 174 aa17.01■□□□□ 0.31
CLN3-230ENST00000568076 FAM212BQ9NTI7 297 aaPredicted RBP17.01■□□□□ 0.31
CLN3-230ENST00000568076 HEATR1Q9H583 2144 aaKnown RBP17.01■□□□□ 0.31
CLN3-230ENST00000568076 CHST1O43916 411 aa17■□□□□ 0.31
CLN3-230ENST00000568076 DANCRP0C864 163 aa17■□□□□ 0.31
CLN3-230ENST00000568076 EGR1P18146 543 aa17■□□□□ 0.31
CLN3-230ENST00000568076 OMGP23515 440 aa17■□□□□ 0.31
CLN3-230ENST00000568076 PAX9P55771 341 aa17■□□□□ 0.31
CLN3-230ENST00000568076 SMIM21Q3B7S5 101 aa17■□□□□ 0.31
CLN3-230ENST00000568076 KIAA2026Q5HYC2 2103 aa17■□□□□ 0.31
CLN3-230ENST00000568076 CD177Q8N6Q3 437 aa17■□□□□ 0.31
CLN3-230ENST00000568076 TPRX1Q8N7U7 411 aa17■□□□□ 0.31
CLN3-230ENST00000568076 HSD17B11Q8NBQ5 300 aa17■□□□□ 0.31
CLN3-230ENST00000568076 OR52L2PQ8NGH6 319 aa17■□□□□ 0.31
CLN3-230ENST00000568076 GALMQ96C23 342 aa17■□□□□ 0.31
CLN3-230ENST00000568076 A0A1B0GU03 582 aa17■□□□□ 0.31
CLN3-230ENST00000568076 OOEPA6NGQ2 149 aa17■□□□□ 0.31
CLN3-230ENST00000568076 IFNL4K9M1U5 179 aa17■□□□□ 0.31
CLN3-230ENST00000568076 IGKV1-5P01602 117 aa17■□□□□ 0.31
CLN3-230ENST00000568076 HBZP02008 142 aa17■□□□□ 0.31
CLN3-230ENST00000568076 CD200P41217 278 aa17■□□□□ 0.31
CLN3-230ENST00000568076 GABRA2P47869 451 aa17■□□□□ 0.31
CLN3-230ENST00000568076 GLIPR1P48060 266 aa17■□□□□ 0.31
CLN3-230ENST00000568076 VAMP2P63027 116 aa17■□□□□ 0.31
CLN3-230ENST00000568076 CLINT1Q14677 625 aa17■□□□□ 0.31
CLN3-230ENST00000568076 KRTCAP3Q53RY4 240 aa17■□□□□ 0.31
CLN3-230ENST00000568076 SPRNQ5BIV9 151 aa17■□□□□ 0.31
CLN3-230ENST00000568076 C10orf91Q5T1B1 145 aa17■□□□□ 0.31
CLN3-230ENST00000568076 C22orf34Q6ZV56 151 aa17■□□□□ 0.31
CLN3-230ENST00000568076 MRGPRDQ8TDS7 321 aa17■□□□□ 0.31
CLN3-230ENST00000568076 C5orf30Q96GV9 206 aa17■□□□□ 0.31
CLN3-230ENST00000568076 SFXN3Q9BWM7 321 aa17■□□□□ 0.31
CLN3-230ENST00000568076 ESRP2Q9H6T0 727 aaKnown RBP17■□□□□ 0.31
CLN3-230ENST00000568076 TREM1Q9NP99 234 aa17■□□□□ 0.31
CLN3-230ENST00000568076 UQCC1Q9NVA1 299 aa17■□□□□ 0.31
CLN3-230ENST00000568076 AGPAT2O15120 278 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 NUPL2O15504 423 aaKnown RBP16.99■□□□□ 0.31
CLN3-230ENST00000568076 SLC25A6P12236 298 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 MMP9P14780 707 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 ZNF16P17020 682 aaPredicted RBP16.99■□□□□ 0.31
CLN3-230ENST00000568076 FHITP49789 147 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 F2RL1P55085 397 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 NKX6-1P78426 367 aaPredicted RBP16.99■□□□□ 0.31
CLN3-230ENST00000568076 ZNF273Q14593 569 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 ZNF295-AS1Q8N0V1 137 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 ABHD17AQ96GS6 310 aa16.99■□□□□ 0.31
CLN3-230ENST00000568076 MKRN2OSH3BPM6 223 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 IGHV3-13P01766 116 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 IL2RGP31785 369 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 GUCA2BQ16661 112 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 SWI5Q1ZZU3 235 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 SLC25A31Q9H0C2 315 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 LIN7CQ9NUP9 197 aaKnown RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 RNF150Q9ULK6 438 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 BSNQ9UPA5 3926 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 CHD3Q12873 2000 aaKnown RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 ANKRD11Q6UB99 2663 aaPredicted RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 DNASE2O00115 360 aaPredicted RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 C1QL1O75973 258 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 CST7O76096 145 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 CRYAAP02489 173 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 FAM27E3Q08E93 113 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms