RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 DLL3Q9NYJ7 618 aa11.46□□□□□ -0.57
CLK3-215ENST00000564353 DEGS1O15121 323 aa11.46□□□□□ -0.58
CLK3-215ENST00000564353 RAB5BP61020 215 aa11.46□□□□□ -0.58
CLK3-215ENST00000564353 RND3P61587 244 aa11.46□□□□□ -0.58
CLK3-215ENST00000564353 AARDQ4LEZ3 155 aa11.46□□□□□ -0.58
CLK3-215ENST00000564353 TPRX1Q8N7U7 411 aa11.46□□□□□ -0.58
CLK3-215ENST00000564353 KDF1Q8NAX2 398 aaPredicted RBP11.46□□□□□ -0.58
CLK3-215ENST00000564353 NEU1Q99519 415 aa11.46□□□□□ -0.58
CLK3-215ENST00000564353 FABP9Q0Z7S8 132 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 NMSQ5H8A3 153 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 ZNF826PQ6ZT77 177 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 WDR86Q86TI4 376 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 CYB561D1Q8N8Q1 229 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 TMEM45BQ96B21 275 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 TMEM56Q96MV1 263 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 UNKLQ9H9P5 680 aaKnown RBP11.45□□□□□ -0.58
CLK3-215ENST00000564353 CACNG5Q9UF02 275 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 TRAPPC2LQ9UL33 140 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 TMEM56-RWDD3S4R434 201 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 IGKV3D-15A0A087WSY6 115 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 TNFSF15O95150 251 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 VDAC1P21796 283 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 PAX9P55771 341 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 NCMAPQ5T1S8 102 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 SPSB3Q6PJ21 355 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 LCN15Q6UWW0 184 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 SVIPQ8NHG7 77 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 DMRT1Q9Y5R6 373 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 RBFOX3A6NFN3 312 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 ZFP92A6NM28 416 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 TMEM11P17152 192 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 F2RP25116 425 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 SPINK9Q5DT21 86 aa11.45□□□□□ -0.58
CLK3-215ENST00000564353 ZNF808Q8N4W9 903 aaPredicted RBP11.45□□□□□ -0.58
CLK3-215ENST00000564353 KIR2DS1A0A191URI9 304 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 CXorf65A6NEN9 183 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 WNT9BO14905 357 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 AGFG2O95081 481 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 IGKV1-39P01597 117 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 IGKV1D-39P04432 117 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 HEXAP06865 529 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 KIR2DS4P43632 304 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 ZNF266Q14584 549 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 KIR2DS1Q14954 304 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 MPV17LQ2QL34 196 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 OR5A2Q8NGI9 324 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 PBDC1Q9BVG4 233 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 C11orf1Q9H5F2 150 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 PLSCR2Q9NRY7 297 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 TREM2Q9NZC2 230 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 GNG13Q9P2W3 67 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 UCP1P25874 307 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 ELLP55199 621 aaPredicted RBP11.44□□□□□ -0.58
CLK3-215ENST00000564353 ARL16Q0P5N6 197 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 LTC4SQ16873 150 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 RNF212Q495C1 297 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 AKR1C8PQ5T2L2 129 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 TMEM164Q5U3C3 297 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 C15orf54Q8N8G6 183 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 SPRR3Q9UBC9 169 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 WASF3Q9UPY6 502 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 OR2W1Q9Y3N9 320 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 CACNA1GO43497 2377 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 ARHGAP21Q5T5U3 1957 aa11.44□□□□□ -0.58
CLK3-215ENST00000564353 DMXL2Q8TDJ6 3036 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 PITX3O75364 302 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 OR2C1O95371 312 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 OR2H2O95918 312 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 IGHV3-13P01766 116 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 IGHV3-7P01780 117 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 SP1P08047 785 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 RAB5AP20339 215 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 RPS10P46783 165 aaKnown RBP11.43□□□□□ -0.58
CLK3-215ENST00000564353 GNG3P63215 75 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 ZNF324BQ6AW86 544 aaPredicted RBP11.43□□□□□ -0.58
CLK3-215ENST00000564353 UNQ6494/PRO21346Q6UXR6 183 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 ZNF295-AS1Q8N0V1 137 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 TECTBQ96PL2 329 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 SPIN2AQ99865 258 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 SPIN2BQ9BPZ2 258 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 SEBOXQ9HB31 216 aaPredicted RBP11.43□□□□□ -0.58
CLK3-215ENST00000564353 CNOT1A5YKK6 2376 aaKnown RBP11.43□□□□□ -0.58
CLK3-215ENST00000564353 H3BQ15 152 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 RPS23P62266 143 aaKnown RBP11.43□□□□□ -0.58
CLK3-215ENST00000564353 ARG2P78540 354 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 ID3Q02535 119 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 SLC10A1Q14973 349 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 SPANXN5Q5MJ07 72 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 CDPF1Q6NVV7 123 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 ABI3Q9P2A4 366 aa11.43□□□□□ -0.58
CLK3-215ENST00000564353 KIAA1324LA8MWY0 1029 aaPredicted RBP11.42□□□□□ -0.58
CLK3-215ENST00000564353 NXPH2O95156 264 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 DEFA4P12838 97 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 CEACAM6P40199 344 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 OR8G2PQ6IF36 304 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 C16orf54Q6UWD8 224 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 BTNL3Q6UXE8 466 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 SSX7Q7RTT5 188 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 CNEP1R1Q8N9A8 125 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 SCCPDHQ8NBX0 429 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms