RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 KDM3BQ7LBC6 1761 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 XIRP1Q702N8 1843 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 LOXHD1Q8IVV2 1947 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DLG5Q8TDM6 1919 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DICER1Q9UPY3 1922 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 PCNX3Q9H6A9 2034 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 CCDC88AQ3V6T2 1871 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 SLIT2O94813 1529 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 A0A087X0K7 114 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 A0A1W2PRS3 328 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ZNF705GA8MUZ8 300 aaPredicted RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 C15orf65H3BRN8 121 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GABARAPH6UMI1 98 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 K7EPK0 472 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 DCTN6O00399 190 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PLPP3O14495 311 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 AZIN1O14977 448 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ERI3O43414 337 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 CD5LO43866 347 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GRAP2O75791 330 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TRAPPC6AO75865 159 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 NDUFB6O95139 128 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 NDUFA7O95182 113 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 UTS2O95399 124 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 DUS4LO95620 317 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 ACTL6AO96019 429 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 HLA-AP01891 365 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 HLA-HP01893 362 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 APOA2P02652 100 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 APOC2P02655 101 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ORM1P02763 201 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GAPDHP04406 335 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 SERPINE2P07093 398 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 CTSLP07711 333 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SOD3P08294 240 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ANKRD34CP0C6C1 535 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SLC35G6P0C7Q6 338 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 LINC00032P0C843 101 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PGAM2P15259 253 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 EVI2AP22794 236 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PRDX3P30048 256 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 HTR1FP30939 366 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PRDX2P32119 198 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PYCR1P32322 319 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GABRA3P34903 492 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 BTCP35070 178 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TNFSF9P41273 254 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 NKX2-1P43699 371 aaPredicted RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 TSFMP43897 325 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 MLF1P58340 268 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TAS2R41P59536 307 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TAS2R20P59543 309 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 UBE2KP61086 200 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SRPXP78539 464 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 LCN2P80188 198 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 HMGCS1Q01581 520 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 RUNX3Q13761 415 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GPNMBQ14956 572 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 RGNQ15493 299 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PMCHL1Q16048 86 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 UPP1Q16831 310 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PSMG4Q5JS54 123 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 LYPLAL1Q5VWZ2 237 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 HBMQ6B0K9 141 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ZFAND6Q6FIF0 208 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ASPHD2Q6ICH7 369 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 BTNL8Q6UX41 500 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 WDR82Q6UXN9 313 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TMEM184AQ6ZMB5 413 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 Q6ZRP5 223 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 Q6ZS92 163 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 NEGR1Q7Z3B1 354 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 CA13Q8N1Q1 262 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 LINC00471Q8N535 108 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 FAM71E2Q8N5Q1 922 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ZSCAN4Q8NAM6 433 aaPredicted RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 OR2Y1Q8NGV0 311 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 OR13G1Q8NGZ3 307 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 CNIH3Q8TBE1 160 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ZNF418Q8TF45 676 aaPredicted RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 THEM6Q8WUY1 208 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TSLPQ969D9 159 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TMEM45BQ96B21 275 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SEH1LQ96EE3 360 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SDSLQ96GA7 329 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 CPB2Q96IY4 423 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 VSTM2LQ96N03 204 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GPR82Q96P67 336 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TSSK3Q96PN8 268 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PYGO2Q9BRQ0 406 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 ZNF649Q9BS31 505 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 RAB11FIP5Q9BXF6 653 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SLC39A8Q9C0K1 460 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 WDR55Q9H6Y2 383 aaPredicted RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 ELOVL3Q9HB03 270 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 PRSS16Q9NQE7 514 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 GPR84Q9NQS5 396 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 INPP5EQ9NRR6 644 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 DMAC2Q9NW81 257 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms