RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CLEC12BQ2HXU8 276 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 HYLS1Q96M11 299 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 CACNG5Q9UF02 275 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 MGAQ8IWI9 3026 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 POM121CA8CG34 1229 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 CST4P01036 141 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 MUC1P15941 1255 aaPredicted RBP7.82□□□□□ -1.16
VPS39-205ENST00000562258 OR2B8PP59922 312 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 RAP2BP61225 183 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 PPP1R1AQ13522 171 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 DYRK1AQ13627 763 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 ADIPOQQ15848 244 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 IGFL2Q6UWQ7 119 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 YIPF5Q969M3 257 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 FLYWCH2Q96CP2 140 aaKnown RBP7.82□□□□□ -1.16
VPS39-205ENST00000562258 SLC35E1Q96K37 410 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 LYZL4Q96KX0 146 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 CLEC18AA5D8T8 446 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 J3QW42 95 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 CA11O75493 328 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 ADAP1O75689 374 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 MT-CO2P00403 227 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 SSTP61278 116 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 HGFACQ04756 655 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 FAM76BQ5HYJ3 339 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 CLEC18CQ8NCF0 446 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 C1RLQ9NZP8 487 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 DSPP15924 2871 aaKnown RBP7.82□□□□□ -1.16
VPS39-205ENST00000562258 IGKV1-9A0A0C4DH69 117 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 IQCF6A8MYZ5 107 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 RBP4P02753 201 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 IL5P05113 134 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 FCGR3AP08637 254 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 HOXA4Q00056 320 aaPredicted RBP7.82□□□□□ -1.16
VPS39-205ENST00000562258 IL13RA2Q14627 380 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 TMEM65Q6PI78 240 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 ACP7Q6ZNF0 438 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 SLC38A6Q8IZM9 456 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 MFSD4AQ8N468 514 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 COA4Q9NYJ1 87 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 MAB21L2Q9Y586 359 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 TNCP24821 2201 aa7.82□□□□□ -1.16
VPS39-205ENST00000562258 TRBV5-7A0A0A0MS05 114 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 LANCL1O43813 399 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 CLEC3BP05452 202 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 DEFA5Q01523 94 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 OR2F1Q13607 317 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 RBMXL1Q96E39 390 aaKnown RBP7.81□□□□□ -1.16
VPS39-205ENST00000562258 NUDT16L1Q9BRJ7 211 aaKnown RBP7.81□□□□□ -1.16
VPS39-205ENST00000562258 ABHD14AQ9BUJ0 271 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 BPESC1Q9GZL8 116 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 OR2W1Q9Y3N9 320 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 DENND4AQ7Z401 1863 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 RNF223E7ERA6 249 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 ADH4P08319 380 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 FSTP19883 344 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 P2RY4P51582 365 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 TBC1D26Q86UD7 250 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 OR4D10Q8NGI6 311 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 MRGPRFQ96AM1 343 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 NPAP1Q9NZP6 1156 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 DKK4Q9UBT3 224 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 EML6Q6ZMW3 1958 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 C3orf85A0A1B0GTC6 90 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 DHRS7CA6NNS2 312 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 CEACAM18A8MTB9 384 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 ZNF705EA8MWA4 302 aaPredicted RBP7.81□□□□□ -1.16
VPS39-205ENST00000562258 M0R036 132 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 TOX4O94842 621 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 PTBP3O95758 552 aaKnown RBP7.81□□□□□ -1.16
VPS39-205ENST00000562258 CRYGSP22914 178 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 COL8A2P25067 703 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 P2RX3P56373 397 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 IL24Q13007 206 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 CST9LP1Q5W188 147 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 FDX2Q6P4F2 183 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 WDR82Q6UXN9 313 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 C11orf44Q8N8P7 122 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 OR10P1Q8NGE3 313 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 OR4S2Q8NH73 311 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 PIPOXQ9P0Z9 390 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 AUP1Q9Y679 476 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 SORL1Q92673 2214 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 LOC390937A0A1W2PQ73 354 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 PTBP1P26599 531 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS39-205ENST00000562258 OPRK1P41145 380 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 EFNA4P52798 201 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 DHRS2Q13268 280 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 ASAH1Q13510 395 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 Q56UQ5 140 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 NCMAPQ5T1S8 102 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 HIST2H2BCQ6DN03 193 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 TLNRD1Q9H1K6 362 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 SLC2A9Q9NRM0 540 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 DCAF16Q9NXF7 216 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 RASL12Q9NYN1 266 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 OR1A1Q9P1Q5 309 aa7.81□□□□□ -1.16
VPS39-205ENST00000562258 ZNF503-AS2A6NEH8 195 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 ERP29P30040 261 aaKnown RBP7.8□□□□□ -1.16
VPS39-205ENST00000562258 G6PCP35575 357 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms