RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TMEM203Q969S6 136 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 MRPS24Q96EL2 167 aaKnown RBP13.96□□□□□ -0.17
HDDC3-205ENST00000559898 FAAP24Q9BTP7 215 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 MBNL3Q9NUK0 354 aaKnown RBP13.96□□□□□ -0.17
HDDC3-205ENST00000559898 GNG12Q9UBI6 72 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 K7EIL1 84 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 PDCD6O75340 191 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 CNTFRP26992 372 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 CHATP28329 748 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 HOXD3P31249 432 aaPredicted RBP13.95□□□□□ -0.18
HDDC3-205ENST00000559898 GPR12P47775 334 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 RPS25P62851 125 aaKnown RBP13.95□□□□□ -0.18
HDDC3-205ENST00000559898 QRFPP83859 136 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 MED22Q15528 200 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 MORN2Q502X0 79 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 LIPKQ5VXJ0 399 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 TMEM91Q6ZNR0 172 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 OR2W3Q7Z3T1 314 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 CEACAM19Q7Z692 300 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 MRPL41Q8IXM3 137 aaKnown RBP13.95□□□□□ -0.18
HDDC3-205ENST00000559898 UQCC2Q9BRT2 126 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 MND1Q9BWT6 205 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 SPACA1Q9HBV2 294 aa13.95□□□□□ -0.18
HDDC3-205ENST00000559898 FAM90A10PA6NDY2 464 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 FAM90A7PA6NKC0 464 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 FAM90A23PA8MXZ1 464 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 H0YHG0 523 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 SPINT2O43291 252 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 SNRPBP14678 240 aaKnown RBP13.94□□□□□ -0.18
HDDC3-205ENST00000559898 OR3A3P47888 321 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 ZNF137PP52743 207 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 SLC35A2P78381 396 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 SPHARQ15513 63 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 C1orf100Q5SVJ3 147 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 C6orf183Q5T699 404 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 RNLSQ5VYX0 342 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 NKAIN3Q8N8D7 197 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 OR2T10Q8NGZ9 312 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 S1PR3Q99500 378 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 HDHD3Q9BSH5 251 aaPredicted RBP13.94□□□□□ -0.18
HDDC3-205ENST00000559898 PARP12Q9H0J9 701 aaKnown RBP13.94□□□□□ -0.18
HDDC3-205ENST00000559898 ABCG5Q9H222 651 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 DCLRE1BQ9H816 532 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 OR2S2Q9NQN1 319 aa13.94□□□□□ -0.18
HDDC3-205ENST00000559898 WI2-2373I1.2A0A1W2PRP0 233 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 RPLP1P05386 114 aaKnown RBP13.93□□□□□ -0.18
HDDC3-205ENST00000559898 CD1BP29016 333 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 MAP2K4P45985 399 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 THBS3P49746 956 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 RPS27AP62979 156 aaKnown RBP13.93□□□□□ -0.18
HDDC3-205ENST00000559898 PLA2G7Q13093 441 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 P2RY14Q15391 338 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 DEFB136Q30KP8 78 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 TGIF2LXQ8IUE1 241 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 CHPT1Q8WUD6 406 aa13.93□□□□□ -0.18
HDDC3-205ENST00000559898 MRPL20Q9BYC9 149 aaKnown RBP13.93□□□□□ -0.18
HDDC3-205ENST00000559898 DNAH9Q9NYC9 4486 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 TMEM14DPA8MWL7 114 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 MOSP00540 346 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 UCHL1P09936 223 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 CD37P11049 281 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 SLC2A2P11168 524 aaPredicted RBP13.92□□□□□ -0.18
HDDC3-205ENST00000559898 SRMP19623 302 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 MAPK3P27361 379 aaPredicted RBP13.92□□□□□ -0.18
HDDC3-205ENST00000559898 LSAMPQ13449 338 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 FAM71E2Q8N5Q1 922 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 KLHL30-AS1Q8NEE0 82 aa13.92□□□□□ -0.18
HDDC3-205ENST00000559898 SLC22A1O15245 554 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 SOCS1O15524 211 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 MYF6P23409 242 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 IL3RAP26951 378 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 HMGN3Q15651 99 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 Q3ZCU0 254 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 HSD17B12Q53GQ0 312 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 MS4A15Q8N5U1 240 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 RAX2Q96IS3 184 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 ABHD14AQ9BUJ0 271 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 TMEM59Q9BXS4 323 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 DUSP21Q9H596 190 aa13.91□□□□□ -0.18
HDDC3-205ENST00000559898 LIN7CQ9NUP9 197 aaKnown RBP13.91□□□□□ -0.18
HDDC3-205ENST00000559898 AK6Q9Y3D8 172 aaKnown RBP13.91□□□□□ -0.18
HDDC3-205ENST00000559898 GLAP06280 429 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 HSMCR30P0CW71 290 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 CLDN12P56749 244 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 CFHR3Q02985 330 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 GLT8D1Q68CQ7 371 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 REC114Q7Z4M0 266 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 PHYHIPQ92561 330 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 P2RX4Q99571 388 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 NABP2Q9BQ15 211 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 TM2D1Q9BX74 207 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 CST11Q9H112 138 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 LPAR5Q9H1C0 372 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 VCXQ9H320 206 aa13.9□□□□□ -0.18
HDDC3-205ENST00000559898 COL7A1Q02388 2944 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 SAA2-SAA4A0A096LPE2 208 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 NUDT19A8MXV4 375 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 ST8SIA5O15466 376 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 LANCL1O43813 399 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 CA11O75493 328 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms