RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	CXCL12	P48061	93 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	ARF1	P84077	181 aa	Known RBP	13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	ATP6V1F	Q16864	119 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	SSX9	Q7RTT3	188 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	OR51H1	Q8NH63	302 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	OR5P3	Q8WZ94	311 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	ACY3	Q96HD9	319 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433	GPHA2	Q96T91	129 aa		13.85	□□□□□ -0.19
SHMT2-231	ENST00000557433		K7ESF4	209 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	ZNF737	O75373	536 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	KBTBD11	O94819	623 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	PFN1	P07737	140 aa	Known RBP	13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	PGA5	P0DJD9	388 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	GNG3	P63215	75 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	CDCP2	Q5VXM1	449 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	CDPF1	Q6NVV7	123 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	FAM58A	Q8N1B3	248 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	IFI44	Q8TCB0	444 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	NOL4L	Q96MY1	436 aa	Predicted RBP	13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	OR5B12	Q96R08	314 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	GPR87	Q9BY21	358 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	ACTR3C	Q9C0K3	210 aa	Predicted RBP	13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	TMEM9B	Q9NQ34	198 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	SLC39A9	Q9NUM3	307 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	PRSS50	Q9UI38	385 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	CABIN1	Q9Y6J0	2220 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433		A0A0G2JMM0	328 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433		A0A1W2PPB8	328 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433		A0A1W2PRS3	328 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	ANKRD30BL	A7E2S9	258 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	KIR3DP1	A8MWS1	328 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	METTL15P1	P0C7V9	234 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	IL2RG	P31785	369 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	GFRA1	P56159	465 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	MEF2B	Q02080	365 aa	Predicted RBP	13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	WIPI1	Q5MNZ9	446 aa	Predicted RBP	13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433		Q6ZRM9	215 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	BATF2	Q8N1L9	274 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	OR4X1	Q8NH49	305 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	ABHD3	Q8WU67	409 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	TAF15	Q92804	592 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	ANAPC16	Q96DE5	110 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	HS3ST6	Q96QI5	342 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	SMIM7	Q9BQ49	75 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433	MANBAL	Q9NQG1	85 aa		13.84	□□□□□ -0.19
SHMT2-231	ENST00000557433		A0A087X0M5	115 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	TRAV24	A0A0B4J272	114 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433		A0A1B0GX30	115 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	C5orf49	A4QMS7	147 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	SLC33A1	O00400	549 aa	Predicted RBP	13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	HSPB6	O14558	160 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	TRAPPC6A	O75865	159 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	PSMB3	P49720	205 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	FAM3B	P58499	235 aa	Predicted RBP	13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	PDZD11	Q5EBL8	140 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	LHX4	Q969G2	390 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	BTF3L4	Q96K17	158 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	VSIR	Q9H7M9	311 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	DLL3	Q9NYJ7	618 aa		13.83	□□□□□ -0.2
SHMT2-231	ENST00000557433	UNC80	Q8N2C7	3258 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	GCG	P01275	180 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	IGKV1-39	P01597	117 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	IGKV1-5	P01602	117 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	IGKV1D-39	P04432	117 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	CEACAM6	P40199	344 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	ARL16	Q0P5N6	197 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	CLN3	Q13286	438 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	BSX	Q3C1V8	233 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	TMEM14EP	Q6UXP3	125 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	C20orf204	Q6ZNR8	217 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	C5orf24	Q7Z6I8	188 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	HAPLN4	Q86UW8	402 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	ZBTB34	Q8NCN2	500 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	OR1P1	Q8NH06	330 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	SNX22	Q96L94	193 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	OR4C12	Q96R67	309 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	RBKS	Q9H477	322 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	IL36RN	Q9UBH0	155 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	BOK	Q9UMX3	212 aa	Predicted RBP	13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	CTXND1	A0A1B0GTU2	59 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	PPP5D1	E7EU14	171 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	NTN3	O00634	580 aa	Predicted RBP	13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	SYNGR1	O43759	233 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	RFPL3S	P0C7P2	107 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	IAPP	P10997	89 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	GDF1	P27539	372 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	PDLIM4	P50479	330 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	PLP2	Q04941	152 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433	SLC38A11	Q08AI6	406 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433		Q8IYB0	196 aa		13.82	□□□□□ -0.2
SHMT2-231	ENST00000557433		H7BYZ3	331 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	VENTX	O95231	258 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	CCNO	P22674	350 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	DUSP3	P51452	185 aa	Predicted RBP	13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	FGF8	P55075	233 aa	Predicted RBP	13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	TESK1	Q15569	626 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	MSMO1	Q15800	293 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	ADIRF	Q15847	76 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	HLA-B	Q31612	363 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	C16orf82	Q7Z2V1	217 aa		13.81	□□□□□ -0.2

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