RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 OR52L2PQ8NGH6 319 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 MSI2Q96DH6 328 aaKnown RBP10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 BOD1Q96IK1 185 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 CABLES2Q9BTV7 478 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 GCM1Q9NP62 436 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 GFOD1Q9NXC2 390 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 DLL3Q9NYJ7 618 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 A0A1W2PPV4 95 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 LNP1A1A4G5 178 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 HBE1P02100 147 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 LINC00205P59089 165 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 BTNL8Q6UX41 500 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 Q9N2K0 584 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 SEMA5BQ9P283 1151 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 OR2W1Q9Y3N9 320 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 LOC102723996A0A087X1L8 192 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 GAPDHP04406 335 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 WDR25Q64LD2 544 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 DHRS7BQ6IAN0 325 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 OR2Z1Q8NG97 314 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 NUDT16L1Q9BRJ7 211 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 MIOXQ9UGB7 285 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 PPP1R2P9O14990 202 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CYTIPO60759 359 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 FABP1P07148 127 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 SNRPCP09234 159 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 FABP4P15090 132 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 EGR1P18146 543 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CD200P41217 278 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 OR1L1Q8NH94 360 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 PRO1933Q9H354 126 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 LAMP3Q9UQV4 416 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CUL9Q8IWT3 2517 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CEP295Q9C0D2 2601 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 TRBV6-7A0A0A0MS04 114 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 ARPC4-TTLL3A0A0A6YYG9 625 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 ST8SIA5O15466 376 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 NKX2-8O15522 239 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CDS2O95674 445 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CFPP27918 469 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 TVP23CQ96ET8 276 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 DCTN5Q9BTE1 182 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 GLRX2Q9NS18 164 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 TAAR3PQ9P1P4 343 aa10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 CARHSP1Q9Y2V2 147 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-211ENST00000556726 IGHV3OR15-7A0A075B7D8 119 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 MAP1LC3B2A6NCE7 125 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 KIAA1324LA8MWY0 1029 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 RAB5CP51148 216 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 SLC38A11Q08AI6 406 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 DEFB109BQ30KR1 87 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 PRAMEF5Q5TYX0 476 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 C20orf204Q6ZNR8 217 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 LRP11Q86VZ4 500 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 GALMQ96C23 342 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 MAP1LC3BQ9GZQ8 125 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF391Q9UJN7 358 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 POLDIP2Q9Y2S7 368 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 TMEM131Q92545 1883 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 TGIF2-C20orf24A0A0A6YYL0 155 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 LRP5LA4QPB2 252 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF503-AS2A6NEH8 195 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 SPRY3O43610 288 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 OR2H2O95918 312 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 CRYAAP02489 173 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 FGF7P21781 194 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 MPZP25189 248 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 CTSSP25774 331 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF83P51522 516 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 CATR1Q13166 79 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 MSMO1Q15800 293 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 PDLIM3Q53GG5 364 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 FAM185AQ8N0U4 392 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 C15orf54Q8N8G6 183 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 TMEM37Q8WXS4 190 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 ATP23Q9Y6H3 246 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 NBEAQ8NFP9 2946 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 WDFY3Q8IZQ1 3526 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 ARFGEF3Q5TH69 2177 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 SPAARA0A1B0GVQ0 90 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 C9orf172C9J069 976 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 FCGR3BO75015 233 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 PLA2G5P39877 138 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 TMEM178AQ8NBL3 297 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 OR5A2Q8NGI9 324 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 TMEM171Q8WVE6 324 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 LEAP2Q969E1 77 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 SNX22Q96L94 193 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 RPRMQ9NS64 109 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 PLA2G2EQ9NZK7 142 aa10.37□□□□□ -0.75
CCDC88C-211ENST00000556726 ADAMTS9Q9P2N4 1935 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 SP1P08047 785 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 CHRNA7P36544 502 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 HOXA1P49639 335 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 HLA-DRB3P79483 266 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 IFT22Q9H7X7 185 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 TRGC2P03986 189 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 OTX1P32242 354 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 B3GALT5-AS1P59052 145 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 EIF3IQ13347 325 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms