RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 NUBP2Q9Y5Y2 271 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 IGHV4-30-2A0A087WSY4 118 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 SPINT2O43291 252 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 HEXAP06865 529 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 CTXN2P0C2S0 81 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 H2AFB2P0C5Z0 115 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 PAX1P15863 534 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 ANXA7P20073 488 aaKnown RBP8.42□□□□□ -1.06
SRP54-208ENST00000555557 CLEC2AQ6UVW9 174 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 OR10V1Q8NGI7 309 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 CLDND2Q8NHS1 167 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 C10orf105Q8TEF2 133 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 GIMAP1Q8WWP7 306 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 TOMM40LQ969M1 308 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 NCOR1P1Q9H4R4 102 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 BARX1Q9HBU1 254 aaPredicted RBP8.42□□□□□ -1.06
SRP54-208ENST00000555557 OR2S2Q9NQN1 319 aa8.42□□□□□ -1.06
SRP54-208ENST00000555557 A0A0B4J293 547 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 IGKV1D-13A0A0B4J2D9 117 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 KBTBD11-OT1A0A1B0GTJ5 212 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 PPYP01298 95 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 IGKV1-13P0DP09 117 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 ZBTB25P24278 435 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 PPP1CCP36873 323 aaKnown RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 GNB2P62879 340 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 MEF2CQ06413 473 aaPredicted RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 TMED4Q7Z7H5 227 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 LDLRAD3Q86YD5 345 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 H1FOOQ8IZA3 346 aaPredicted RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 CORO2AQ92828 525 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 LEAP2Q969E1 77 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 SLC25A21Q9BQT8 299 aaPredicted RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 PIMREGQ9BSJ6 248 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 RDH8Q9NYR8 311 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 ZNF69Q9UC07 566 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 LINC00312Q9Y6C7 94 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 SVEP1Q4LDE5 3571 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 IGHV4-61A0A0C4DH41 118 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 C22orf46C9J442 243 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 NPIPB11E5RHQ5 1161 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 F5H0A9 414 aaPredicted RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 TUSC2O75896 110 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 IGHV2-5P01817 119 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 TRAPPC2P0DI81 140 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 TRAPPC2BP0DI82 140 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 DNASE1P24855 282 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 ZFP36P26651 326 aaKnown RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 LMO4P61968 165 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 CLEC12BQ2HXU8 276 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 DEFB113Q30KQ7 82 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 PRAMEF5Q5TYX0 476 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 TRAT1Q6PIZ9 186 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 ADAD2Q8NCV1 583 aaKnown RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 ZNF714Q96N38 554 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 SSBP3Q9BWW4 388 aaPredicted RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 FXYD6Q9H0Q3 95 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 GPR132Q9UNW8 380 aa8.41□□□□□ -1.06
SRP54-208ENST00000555557 UBE2J1Q9Y385 318 aaPredicted RBP8.41□□□□□ -1.06
SRP54-208ENST00000555557 APCP25054 2843 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 ARHGAP32A7KAX9 2087 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 ZNF729A6NN14 1252 aaPredicted RBP8.4□□□□□ -1.06
SRP54-208ENST00000555557 VWC2LB2RUY7 222 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 DIRAS3O95661 229 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 VSIG10L2P0DP72 767 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 PGAM2P15259 253 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 NFYBP25208 207 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 DLX1P56177 255 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 LOXL3P58215 753 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 PRB3Q04118 309 aaPredicted RBP8.4□□□□□ -1.06
SRP54-208ENST00000555557 TATDN3Q17R31 274 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 ESCO2Q56NI9 601 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 CCDC28AQ8IWP9 274 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 SECTM1Q8WVN6 248 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 MOB3AQ96BX8 217 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 RTBDNQ9BSG5 229 aaPredicted RBP8.4□□□□□ -1.06
SRP54-208ENST00000555557 C5orf66Q9H5L9 145 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 GNG12Q9UBI6 72 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 OPN4Q9UHM6 478 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 RPUSD1Q9UJJ7 312 aaKnown RBP8.4□□□□□ -1.06
SRP54-208ENST00000555557 OR2W1Q9Y3N9 320 aa8.4□□□□□ -1.06
SRP54-208ENST00000555557 DOCK11Q5JSL3 2073 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 PPIAL4CA0A0B4J2A2 164 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 NDUFS8O00217 210 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 F2RL2O00254 374 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 PEX14O75381 377 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 OR8U9P0C7N5 309 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 ZNF728P0DKX0 622 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 PPIAL4GP0DN37 164 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 AKR1C4P17516 323 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 FPR2P25090 351 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 HERV-K104P61576 105 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 LCN2P80188 198 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 HTD2P86397 168 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 OR8U1Q8NH10 309 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 NINJ1Q92982 152 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 GPHA2Q96T91 129 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 SEC22CQ9BRL7 303 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 CCL28Q9NRJ3 127 aa8.39□□□□□ -1.07
SRP54-208ENST00000555557 BEX4Q9NWD9 120 aaPredicted RBP8.39□□□□□ -1.07
SRP54-208ENST00000555557 TAS2R3Q9NYW6 316 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms