RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FOXN4Q96NZ1 517 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 NICN1Q9BSH3 213 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 CABLES2Q9BTV7 478 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 EMC9Q9Y3B6 208 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 R4GMQ9 66 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 CELSR1Q9NYQ6 3014 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 AKAP9Q99996 3911 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 SLC22A20A6NK97 555 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 DHRS7CA6NNS2 312 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 MS4A18H0YCH9 400 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 SDCBPO00560 298 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 LMX1BO60663 402 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 TNFSF13O75888 250 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 CYB5R3P00387 301 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 MBPP02686 304 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 OPN1MWP04001 364 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 ISG15P05161 165 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 OPN1MW2P0DN77 364 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 OPN1MW3P0DN78 364 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 HIST1H1DP16402 221 aaKnown RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 CTSSP25774 331 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 FKBP2P26885 142 aaKnown RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 CCKARP32238 428 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 GNALP38405 381 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 TAS2R46P59540 309 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 BPIFB3P59826 476 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 COL10A1Q03692 680 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 PNRC1Q12796 327 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 TAF9Q16594 264 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 MS4A18Q3C1V0 323 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 C1orf194Q5T5A4 169 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 MRPL41Q8IXM3 137 aaKnown RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 OR52N4Q8NGI2 321 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 OR2G3Q8NGZ4 309 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 MRPL24Q96A35 216 aaKnown RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 ABHD6Q9BV23 337 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 SRXN1Q9BYN0 137 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 CHST11Q9NPF2 352 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 EHFQ9NZC4 300 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 FBLN5Q9UBX5 448 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 AK3Q9UIJ7 227 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 RCL1Q9Y2P8 373 aaKnown RBP6.56□□□□□ -1.36
LIMA1-216ENST00000552909 CCDC168Q8NDH2 2452 aa6.56□□□□□ -1.36
LIMA1-216ENST00000552909 IGHV3-15A0A0B4J1V0 119 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 KIR2DL5BA0A0G2JN68 375 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 KIR2DL5BA0A0G2JPC4 375 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 FAM230AA0A1W2PPH8 454 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM14DPA8MWL7 114 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 HLA-DOBP13765 273 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ALDH3B1P43353 468 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 KIR2DL2P43627 348 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 RPL29P47914 159 aaKnown RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 CARD18P57730 90 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 CSNK2A1P68400 391 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ARFRP1Q13795 201 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 PLAC9Q5JTB6 97 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 VWA1Q6PCB0 445 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 P4HA3Q7Z4N8 544 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 FAM185AQ8N0U4 392 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 KIR2DL5AQ8N109 375 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 CSNK2A3Q8NEV1 391 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 NOXO1Q8NFA2 376 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 OR52N5Q8NH56 324 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 OR2V1Q8NHB1 315 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 NEK7Q8TDX7 302 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ACY3Q96HD9 319 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ST6GALNAC5Q9BVH7 336 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 LPAR5Q9H1C0 372 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 SRD5A3Q9H8P0 318 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 GPR173Q9NS66 373 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ALPK2Q86TB3 2170 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 CREBBPQ92793 2442 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 A0A1B0GU03 582 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 A0A1W2PNV4 684 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 PPP5D1E7EU14 171 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 P2RY10O00398 339 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 SOCS1O15524 211 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 XRCC2O43543 280 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 CDC14BO60729 498 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 SRSF10O75494 262 aaKnown RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 IGFBP2P18065 325 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 MDKP21741 143 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ECI1P42126 302 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 SNU13P55769 128 aaKnown RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 RPL23AP62750 156 aaKnown RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 PMS2P11Q13670 270 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF266Q14584 549 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 IL13RA2Q14627 380 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ACKR1Q16570 336 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 NCR3LG1Q68D85 454 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF705AQ6ZN79 300 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF295-AS1Q8N0V1 137 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 CNEP1R1Q8N9A8 125 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 SLC26A10Q8NG04 563 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 OR10G4Q8NGN3 311 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ABHD3Q8WU67 409 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 STARD4Q96DR4 205 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 RBMXL1Q96E39 390 aaKnown RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 HIST1H2AAQ96QV6 131 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms