RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 IL3RAP26951 378 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 REG1BP48304 166 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 FHITP49789 147 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 Q0VFX4 171 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 ACOT6Q3I5F7 207 aaPredicted RBP12.87□□□□□ -0.35
CUX1-214ENST00000550008 PRDM14Q9GZV8 571 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 CDS2O95674 445 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 MRPS11P82912 194 aaKnown RBP12.87□□□□□ -0.35
CUX1-214ENST00000550008 NSUN5P2Q63ZY6 315 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 KCNIP4Q6PIL6 250 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 UQCC3Q6UW78 93 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 OR4A4PQ8NGN8 299 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 LEAP2Q969E1 77 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 OR2V2Q96R30 315 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 PRR14LQ5THK1 2151 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 PLXNB3Q9ULL4 1909 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 IGKV1D-8A0A087WSZ0 117 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 P2RY1P47900 373 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 KCNJ3P48549 501 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 ZNF345Q14585 488 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 RNF212Q495C1 297 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 R3HDM4Q96D70 268 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 PIEZO2Q9H5I5 2752 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 E9PQ18 207 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 TOX4O94842 621 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 PRDX2P32119 198 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 LRRC10Q5BKY1 277 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 TIMD4Q96H15 378 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 SAMD10Q9BYL1 202 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 A0A0A6YYD4 124 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 OOEPA6NGQ2 149 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 ZNF716A6NP11 495 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 PRR33A8MZF0 331 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 PPP1R2P9O14990 202 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 MEOX2P50222 304 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 TMEM252Q8N6L7 170 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 ITLN1Q8WWA0 313 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 TPPP3Q9BW30 176 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 SLC35B3Q9H1N7 401 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 SAP30LQ9HAJ7 183 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 KIF26AQ9ULI4 1882 aaPredicted RBP12.86□□□□□ -0.35
CUX1-214ENST00000550008 CRYM-AS1A6NIL9 109 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 HBZP02008 142 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 CD59P13987 128 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 SRSF6Q13247 344 aaKnown RBP12.86□□□□□ -0.35
CUX1-214ENST00000550008 TMEM41BQ5BJD5 291 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 CA5BP1Q8WTZ4 195 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 MOB3AQ96BX8 217 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 RSG1Q9BU20 258 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 LRRK1Q38SD2 2015 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 PLCE1Q9P212 2302 aa12.86□□□□□ -0.35
CUX1-214ENST00000550008 PPP5D1E7EU14 171 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 NQO2P16083 231 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 CTRB1P17538 263 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 CD82P27701 267 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 ERHP84090 104 aaKnown RBP12.85□□□□□ -0.35
CUX1-214ENST00000550008 C9orf152Q5JTZ5 239 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 CTRB2Q6GPI1 263 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 ZNF818PQ6ZRF7 136 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 SSMEM1Q8WWF3 244 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 TP53RKQ96S44 253 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 CCL13Q99616 98 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 POMT1Q9Y6A1 747 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 GTF3C1Q12789 2109 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 RANBP2P49792 3224 aaKnown RBP12.85□□□□□ -0.35
CUX1-214ENST00000550008 CLDN14O95500 239 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 SNRPCP09234 159 aaKnown RBP12.85□□□□□ -0.35
CUX1-214ENST00000550008 LHX2P50458 406 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 ZGRF1Q86YA3 2104 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 DTD1Q8TEA8 209 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 SAT2Q96F10 170 aaPredicted RBP12.85□□□□□ -0.35
CUX1-214ENST00000550008 BRCA2P51587 3418 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 IGLV3-32A0A0A0MS00 114 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 TFF1P04155 84 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 ZNF708P17019 499 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 HOXA6P31267 233 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 KCNMB1Q16558 191 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 NCR3LG1Q68D85 454 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 SLC16A13Q7RTY0 426 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 C5orf24Q7Z6I8 188 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 V9GYS6 101 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 MELTFP08582 738 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 MUC1P15941 1255 aaPredicted RBP12.85□□□□□ -0.35
CUX1-214ENST00000550008 TNFSF10P50591 281 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 AWAT1Q58HT5 328 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 NHLRC3Q5JS37 347 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 TMEM222Q9H0R3 208 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 SLC2A8Q9NY64 477 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 DOK5Q9P104 306 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 HSF4Q9ULV5 492 aa12.85□□□□□ -0.35
CUX1-214ENST00000550008 ACACBO00763 2458 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 ZNF883P0CG24 379 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 GLIPR1P48060 266 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 CLDN18P56856 261 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 FAM201AQ5SY85 155 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 BMPERQ8N8U9 685 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 DAZAP1Q96EP5 407 aaKnown RBP12.84□□□□□ -0.35
CUX1-214ENST00000550008 IL36GQ9NZH8 169 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 OR6C3Q9NZP0 311 aa12.84□□□□□ -0.35
CUX1-214ENST00000550008 PROB1E7EW31 1015 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms