RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SESN1Q9Y6P5 492 aa9.33□□□□□ -0.92
CUX1-212ENST00000547394 MED6O75586 246 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 IGLV1-44P01699 117 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 CTRB1P17538 263 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 CTRB2Q6GPI1 263 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 FAM180AQ6UWF9 173 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 Q6ZRM9 215 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 BEND4Q6ZU67 534 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 CMTM1Q8IZ96 169 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 H1FOOQ8IZA3 346 aaPredicted RBP9.32□□□□□ -0.92
CUX1-212ENST00000547394 DEFB108BQ8NET1 73 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 COQ2Q96H96 371 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 WASF3Q9UPY6 502 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 MAP1AP78559 2803 aaPredicted RBP9.32□□□□□ -0.92
CUX1-212ENST00000547394 C12orf77C9JDV5 145 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 MKRN2OSH3BPM6 223 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 ST8SIA3O43173 380 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 FAM157CP0CG43 387 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 MOGAT3Q86VF5 341 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 CCDC36Q8IYA8 594 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 ZNRF1Q8ND25 227 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 ITPR1Q14643 2758 aa9.32□□□□□ -0.92
CUX1-212ENST00000547394 TUBAL3A6NHL2 446 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 NUBP1P53384 320 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 RPS16P62249 146 aaKnown RBP9.31□□□□□ -0.92
CUX1-212ENST00000547394 ZNF146Q15072 292 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 P2RY6Q15077 328 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 ACP7Q6ZNF0 438 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 IQCF2Q8IXL9 164 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 CD177Q8N6Q3 437 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 Q8NA96 180 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 OR4A4PQ8NGN8 299 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 OR13A1Q8NGR1 328 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 STOML3Q8TAV4 291 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 OR2V2Q96R30 315 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 CXXC4Q9H2H0 198 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 SNAPC5O75971 98 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 SERPINE2P07093 398 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 F2RP25116 425 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 NKX2-1P43699 371 aaPredicted RBP9.31□□□□□ -0.92
CUX1-212ENST00000547394 DOLPP1Q86YN1 238 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 FGFRL1Q8N441 504 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 OR4D5Q8NGN0 318 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 ABHD14BQ96IU4 210 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 DNTTIP1Q9H147 329 aa9.31□□□□□ -0.92
CUX1-212ENST00000547394 RALYQ9UKM9 306 aaKnown RBP9.31□□□□□ -0.92
CUX1-212ENST00000547394 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.3□□□□□ -0.92
CUX1-212ENST00000547394 A0A0G2JNJ9 132 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 IGSF23A1L1A6 192 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 RAMP3O60896 148 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 IGKV1-39P01597 117 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 IGKV1D-39P04432 117 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 CCKARP32238 428 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 MST1LQ2TV78 715 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 Q6ZS49 121 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 WFDC8Q8IUA0 241 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 C1orf162Q8NEQ5 155 aaPredicted RBP9.3□□□□□ -0.92
CUX1-212ENST00000547394 LEAP2Q969E1 77 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 MUCL1Q96DR8 90 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 C5orf30Q96GV9 206 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 FAM234AQ9H0X4 552 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 Q9UFV3 132 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ANKHD1Q8IWZ3 2542 aaKnown RBP9.3□□□□□ -0.92
CUX1-212ENST00000547394 E5RGE8 158 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 WRBO00258 174 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 EIF3GO75821 320 aaKnown RBP eCLIP9.3□□□□□ -0.92
CUX1-212ENST00000547394 CDS2O95674 445 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 HBZP02008 142 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 CRYAAP02489 173 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 IAPPP10997 89 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 IL2RGP31785 369 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 KRBOX4Q5JUW0 171 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 FAM122CQ6P4D5 195 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ZNF880Q6PDB4 577 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 LRTM2Q8N967 370 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 OR2D2Q9H210 308 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 DNAJB11Q9UBS4 358 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 NSG2Q9Y328 171 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 TMED3Q9Y3Q3 217 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ARFGEF3Q5TH69 2177 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.3□□□□□ -0.92
CUX1-212ENST00000547394 ABCD4O14678 606 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 CHST1O43916 411 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ZNF816Q0VGE8 651 aaPredicted RBP9.3□□□□□ -0.92
CUX1-212ENST00000547394 SPINK9Q5DT21 86 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 LINC00596Q86U02 117 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 DRAM1Q8N682 238 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 RNF141Q8WVD5 230 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ITLN1Q8WWA0 313 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 GPR146Q96CH1 333 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 PHYHIPLQ96FC7 376 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 ABHD14AQ9BUJ0 271 aa9.3□□□□□ -0.92
CUX1-212ENST00000547394 MRPL37Q9BZE1 423 aaKnown RBP9.3□□□□□ -0.92
CUX1-212ENST00000547394 PIEZO1Q92508 2521 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 A0A1W2PPE3 182 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 ST8SIA5O15466 376 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 CD80P33681 288 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 EWSR1Q01844 656 aaKnown RBP eCLIP9.29□□□□□ -0.922e-6■■■□□ 16.3
CUX1-212ENST00000547394 ZNF616Q08AN1 781 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 TMEM267Q0VDI3 215 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms