RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 SEBOXQ9HB31 216 aaPredicted RBP12.56□□□□□ -0.4
HOXC11-202ENST00000546378 ZNF729A6NN14 1252 aaPredicted RBP12.56□□□□□ -0.4
HOXC11-202ENST00000546378 CLDN15P56746 228 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 CRIP3Q6Q6R5 217 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 RPS19BP1Q86WX3 136 aaKnown RBP12.56□□□□□ -0.4
HOXC11-202ENST00000546378 KMT5CQ86Y97 462 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 GINS3Q9BRX5 216 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 TUBD1Q9UJT1 453 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 STRAPQ9Y3F4 350 aaKnown RBP12.56□□□□□ -0.4
HOXC11-202ENST00000546378 MAP1LC3B2A6NCE7 125 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 TRDCB7Z8K6 153 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 H7BYZ3 331 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 RHBDL1O75783 438 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 COL10A1Q03692 680 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 NCR3LG1Q68D85 454 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 GPR87Q9BY21 358 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 MAP1LC3BQ9GZQ8 125 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 TREM2Q9NZC2 230 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 DMRT1Q9Y5R6 373 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 PPP5D1E7EU14 171 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 IGHMP01871 453 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 OPN1MWP04001 364 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 OPN1MW2P0DN77 364 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 OPN1MW3P0DN78 364 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 RAB4BP61018 213 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ARL16Q0P5N6 197 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ZP4Q12836 540 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ALKBH6Q3KRA9 238 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 GCSAMLQ5JQS6 135 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 DHRS13Q6UX07 377 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 TCF23Q7RTU1 214 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 SELENOHQ8IZQ5 122 aaKnown RBP12.55□□□□□ -0.4
HOXC11-202ENST00000546378 FAM89BQ8N5H3 189 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 OR10J5Q8NHC4 309 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ADGRG7Q96K78 797 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ZNF552Q9H707 407 aaPredicted RBP12.55□□□□□ -0.4
HOXC11-202ENST00000546378 RNF122Q9H9V4 155 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 MAP1AP78559 2803 aaPredicted RBP12.55□□□□□ -0.4
HOXC11-202ENST00000546378 LRRC3CA6NJW4 275 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ZNF737O75373 536 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 SUCLG1P53597 346 aaKnown RBP12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ZNF441Q8N8Z8 693 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 GPR146Q96CH1 333 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 TUBG2Q9NRH3 451 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 TMED3Q9Y3Q3 217 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 ABCA4P78363 2273 aa12.55□□□□□ -0.4
HOXC11-202ENST00000546378 SEC14L6B5MCN3 397 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 CLDN34H7C241 214 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 CELA3AP09093 270 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 EDDM3BP56851 147 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 PRDX4Q13162 271 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 IL13RA2Q14627 380 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 MKXQ8IYA7 352 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 OR13D1Q8NGV5 346 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 OR10D3Q8NH80 312 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 TMEM222Q9H0R3 208 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 ACACAQ13085 2346 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SLC22A20A6NK97 555 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 C1QTNF9BB2RNN3 333 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 MRPL33O75394 65 aaKnown RBP12.54□□□□□ -0.4
HOXC11-202ENST00000546378 P04436 131 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SERPINA7P05543 415 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 G6PCP35575 357 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SSTP61278 116 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 EDDM3AQ14507 147 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 FAM78BQ5VT40 261 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 HIST3H2BBQ8N257 126 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 HIST1H2BLQ99880 126 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 Q9N2K0 584 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SELENOKQ9Y6D0 94 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 TCAPO15273 167 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SELLP14151 372 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 PTGDSP41222 190 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 EIF3IQ13347 325 aaKnown RBP12.54□□□□□ -0.4
HOXC11-202ENST00000546378 RABEPKQ7Z6M1 372 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 CPEB3Q8NE35 698 aaKnown RBP12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SPIN2AQ99865 258 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 SPIN2BQ9BPZ2 258 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 PRDM13Q9H4Q3 707 aa12.54□□□□□ -0.4
HOXC11-202ENST00000546378 ZNF320A2RRD8 509 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 YKT6O15498 198 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 PAGE4O60829 102 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 HSPB1P04792 205 aaKnown RBP12.53□□□□□ -0.4
HOXC11-202ENST00000546378 OR4A8P0C604 315 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 RBM11P57052 281 aaKnown RBP12.53□□□□□ -0.4
HOXC11-202ENST00000546378 ARF1P84077 181 aaKnown RBP12.53□□□□□ -0.4
HOXC11-202ENST00000546378 ERASQ7Z444 233 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 NFAM1Q8NET5 270 aaPredicted RBP12.53□□□□□ -0.4
HOXC11-202ENST00000546378 ZDHHC16Q969W1 377 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 IMMP2LQ96T52 175 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 NOSIPQ9Y314 301 aaKnown RBP12.53□□□□□ -0.4
HOXC11-202ENST00000546378 PPIAL4AQ9Y536 164 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 CLEC18AA5D8T8 446 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 SSR4P51571 173 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 RAB1AP62820 205 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 CLEC18CQ8NCF0 446 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 CLDND2Q8NHS1 167 aa12.53□□□□□ -0.4
HOXC11-202ENST00000546378 C9J4A7 227 aa12.52□□□□□ -0.4
HOXC11-202ENST00000546378 EREGO14944 169 aa12.52□□□□□ -0.4
HOXC11-202ENST00000546378 GALR1P47211 349 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms