RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 DEFB121Q5J5C9 76 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 AHSA2Q719I0 299 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 Q8N9W7 124 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 OR8U1Q8NH10 309 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 OR4K15Q8NH41 348 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 Q96M66 194 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 S1PR3Q99500 378 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 JPT1Q9UK76 154 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 LRRC42Q9Y546 428 aa10.34□□□□□ -0.75
RTN3-213ENST00000543552 LANCL1O43813 399 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 HOXD3P31249 432 aaPredicted RBP10.33□□□□□ -0.76
RTN3-213ENST00000543552 KRTAP10-11P60412 298 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 MS4A15Q8N5U1 240 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 ZNF439Q8NDP4 499 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 OR10V1Q8NGI7 309 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 TFAP2CQ92754 450 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 P2RX4Q99571 388 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 CHCHD6Q9BRQ6 235 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 ABHD14AQ9BUJ0 271 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 BANF2Q9H503 90 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 TAF9BQ9HBM6 251 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 OR2S2Q9NQN1 319 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 PLCXD1Q9NUJ7 323 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 MBNL3Q9NUK0 354 aaKnown RBP10.33□□□□□ -0.76
RTN3-213ENST00000543552 PSORS1C1Q9UIG5 152 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 ZNF580Q9UK33 172 aa10.33□□□□□ -0.76
RTN3-213ENST00000543552 WI2-2373I1.2A0A1W2PRP0 233 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 H0YHG0 523 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 CCL24O00175 119 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 SLC31A2O15432 143 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 RCC1P18754 421 aaPredicted RBP10.32□□□□□ -0.76
RTN3-213ENST00000543552 CDX1P47902 265 aaPredicted RBP10.32□□□□□ -0.76
RTN3-213ENST00000543552 RAB25P57735 213 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 HTD2P86397 168 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 CD69Q07108 199 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 LSAMPQ13449 338 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 CT45A1Q5HYN5 189 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 VAX1Q5SQQ9 334 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 FAM71E2Q8N5Q1 922 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 RNF152Q8N8N0 203 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 OR5M8Q8NGP6 311 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 OR1L1Q8NH94 360 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 CT45A3Q8NHU0 189 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 NEDD4LQ96PU5 975 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 MND1Q9BWT6 205 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 PLSCR3Q9NRY6 295 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 ABRACLQ9P1F3 81 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 COL7A1Q02388 2944 aa10.32□□□□□ -0.76
RTN3-213ENST00000543552 UBE2QL1A1L167 161 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 RAMP3O60896 148 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 IGHG4P01861 327 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 IGF1P05019 195 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 RPLP1P05386 114 aaKnown RBP10.31□□□□□ -0.76
RTN3-213ENST00000543552 GNAO1P09471 354 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 DGCR2P98153 550 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 MMDQ15546 238 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 NKAPLQ5M9Q1 402 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 LY6G6FQ5SQ64 297 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 GLT8D1Q68CQ7 371 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 NANOGP1Q8N7R0 232 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 BPIFB6Q8NFQ5 453 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 OR2AK2Q8NG84 335 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 PHYHIPQ92561 330 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 FAM46BQ96A09 425 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 GALMQ96C23 342 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 RAX2Q96IS3 184 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 DCLRE1BQ9H816 532 aa10.31□□□□□ -0.76
RTN3-213ENST00000543552 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.31□□□□□ -0.76
RTN3-213ENST00000543552 ZNF107Q9UII5 783 aaPredicted RBP10.31□□□□□ -0.76
RTN3-213ENST00000543552 LINC01548A6NM66 108 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 ZNF736B4DX44 427 aaPredicted RBP10.3□□□□□ -0.76
RTN3-213ENST00000543552 ZNF134P52741 427 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 GABPB1Q06547 395 aaPredicted RBP10.3□□□□□ -0.76
RTN3-213ENST00000543552 KIR2DS1Q14954 304 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 MORN2Q502X0 79 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 OGFRL1Q5TC84 451 aaPredicted RBP10.3□□□□□ -0.76
RTN3-213ENST00000543552 RNLSQ5VYX0 342 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 FAM53AQ6NSI3 398 aaPredicted RBP10.3□□□□□ -0.76
RTN3-213ENST00000543552 C18orf65Q6ZTR6 163 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 LYPD6Q86Y78 171 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 KCNG3Q8TAE7 436 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 MRPL30Q8TCC3 161 aaKnown RBP10.3□□□□□ -0.76
RTN3-213ENST00000543552 FBLIM1Q8WUP2 373 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 C4orf3Q8WVX3 66 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 B9D2Q9BPU9 175 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 ZNF251Q9BRH9 671 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 TMEM59Q9BXS4 323 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 STEAP1Q9UHE8 339 aa10.3□□□□□ -0.76
RTN3-213ENST00000543552 CASQ2O14958 399 aaPredicted RBP10.29□□□□□ -0.76
RTN3-213ENST00000543552 YPEL1O60688 119 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 MYF6P23409 242 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 PPP1CCP36873 323 aaKnown RBP10.29□□□□□ -0.76
RTN3-213ENST00000543552 RANBP1P43487 201 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 CFHR3Q02985 330 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 ACSM3Q53FZ2 586 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 RBM48Q5RL73 367 aaKnown RBP10.29□□□□□ -0.76
RTN3-213ENST00000543552 C9orf66Q5T8R8 295 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 SIGIRRQ6IA17 410 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 FAM71F2Q6NXP2 309 aa10.29□□□□□ -0.76
RTN3-213ENST00000543552 TMEM65Q6PI78 240 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms