RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TMEM33P57088 247 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 FABP9Q0Z7S8 132 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 UBE2L3P68036 154 aaKnown RBP12.17□□□□□ -0.46
USP3-204ENST00000540797 ACSF3Q4G176 576 aaPredicted RBP12.17□□□□□ -0.46
USP3-204ENST00000540797 SPACA3Q8IXA5 215 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 BVESQ8NE79 360 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 DYNLRB2Q8TF09 96 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 NAGKQ9UJ70 344 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 IGKV3-7A0A075B6H7 116 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 NKX2-6A6NCS4 301 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 SPTBP11277 2137 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 APOBEC3AP31941 199 aaPredicted RBP12.16□□□□□ -0.46
USP3-204ENST00000540797 LYZL2Q7Z4W2 148 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 KLK13Q9UKR3 277 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 IGHV3-72A0A0B4J1Y9 119 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 PPIAL4CA0A0B4J2A2 164 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 SLC31A2O15432 143 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 PPIAL4GP0DN37 164 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 GUK1Q16774 197 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 FAM209AQ5JX71 171 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 OR51B2Q9Y5P1 312 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 A0A1W2PPQ1 181 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 ADAD2Q8NCV1 583 aaKnown RBP12.16□□□□□ -0.46
USP3-204ENST00000540797 LOC102723996A0A087X1L8 192 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 A0A1B0GU03 582 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 MC5RP33032 325 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 GAMTQ14353 236 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 ZNRF4Q8WWF5 429 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 ATP5SQ99766 215 aa12.16□□□□□ -0.46
USP3-204ENST00000540797 DHRS7CA6NNS2 312 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 HPRT1P00492 218 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 NTF3P20783 257 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 KLF9Q13886 244 aaPredicted RBP12.15□□□□□ -0.46
USP3-204ENST00000540797 TEX261Q6UWH6 196 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 PDPNQ86YL7 162 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM219AQ8IW50 185 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 LPAR5Q9H1C0 372 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 TECRQ9NZ01 308 aaKnown RBP12.15□□□□□ -0.46
USP3-204ENST00000540797 U3KQ87 197 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A10PA6NDY2 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A18PA6NE21 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A16PA6NEW6 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A20PA6NIJ5 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A8PA6NJQ4 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A7PA6NKC0 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A22PA8MWA6 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A12PA8MX19 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A5PA8MXJ8 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A23PA8MXZ1 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A15PP0C7V4 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A13PP0C7W8 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A14PP0C7W9 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FAM90A24PP0C7X0 464 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 NPY1RP25929 384 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 ZNF154Q13106 437 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 IGSF11Q5DX21 431 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 MYPOPQ86VE0 399 aaPredicted RBP12.15□□□□□ -0.46
USP3-204ENST00000540797 ABHD14BQ96IU4 210 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 PARP11Q9NR21 331 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 CNOT1A5YKK6 2376 aaKnown RBP12.15□□□□□ -0.46
USP3-204ENST00000540797 PTPRFP10586 1907 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 ODAMA1E959 279 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 ZNF737O75373 536 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 CLEC9AQ6UXN8 241 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 OR8I2Q8N0Y5 310 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FADS6Q8N9I5 356 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 RNASEK-C17orf49H0YIS7 233 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 J3QW42 95 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 CDS2O95674 445 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 ARF6P62330 175 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 ZNF429Q86V71 674 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 FLVCR1-AS1Q8TAF5 88 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 SSMEM1Q8WWF3 244 aa12.15□□□□□ -0.46
USP3-204ENST00000540797 LOC105371242A0A075B767 164 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 MED19A0JLT2 244 aaPredicted RBP12.14□□□□□ -0.47
USP3-204ENST00000540797 NPIPB9F8W1W9 429 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 CPN1P15169 458 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 HLA-GP17693 338 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 TMEM50BP56557 158 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 SPTBN2O15020 2390 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 ZFC3H1O60293 1989 aaKnown RBP12.14□□□□□ -0.47
USP3-204ENST00000540797 ALX3O95076 343 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 GLRXP35754 106 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 GNG4P50150 75 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 DLL3Q9NYJ7 618 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 IDI2-AS1Q9NZ38 188 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 KCNK7Q9Y2U2 307 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 CALYQ9NYX4 217 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 MMP24Q9Y5R2 645 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 WSB1Q9Y6I7 421 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 LEUTXA8MZ59 168 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 CDK2AP1O14519 115 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 SCTP09683 121 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 ZNF552Q9H707 407 aaPredicted RBP12.14□□□□□ -0.47
USP3-204ENST00000540797 G6PC2Q9NQR9 355 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 IGHV3-21A0A0B4J1V1 117 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 SEC14L6B5MCN3 397 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 CD40P25942 277 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 FGF8P55075 233 aaPredicted RBP12.14□□□□□ -0.47
USP3-204ENST00000540797 SLC35B1P78383 322 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms