RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 INO80CQ6PI98 192 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 PET117Q6UWS5 81 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 HAPLN4Q86UW8 402 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 CDC20BQ86Y33 519 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 LILRA3Q8N6C8 439 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 OR5C1Q8NGR4 320 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 WFDC5Q8TCV5 224 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 DPF1Q92782 380 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 SLC25A44Q96H78 314 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 AMELYQ99218 206 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 FNDC4Q9H6D8 234 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 PRDM6Q9NQX0 595 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 TSSC4Q9Y5U2 329 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 A0A0G2JMM0 328 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 A0A1W2PPB8 328 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 FAM231BA6NCW3 169 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 KIR3DP1A8MWS1 328 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 LAMTOR5O43504 91 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 GPR75O95800 540 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 CGAP01215 116 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 RHOCP08134 193 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 AMY2BP19961 511 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 PMCHP20382 165 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 ID1P41134 155 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 GUCA1AP43080 201 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 CYB561P49447 251 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 Q0VG73 95 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 RNFT1Q5M7Z0 435 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 LYZL2Q7Z4W2 148 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 LYPD6Q86Y78 171 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 ST6GALNAC6Q969X2 333 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 TMEM45BQ96B21 275 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 ZNF764Q96H86 408 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 PSMG3Q9BT73 122 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-214ENST00000540539 NPFFR1Q9GZQ6 430 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 METTL7AQ9H8H3 244 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 RPRMQ9NS64 109 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 SLC7A10Q9NS82 523 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 HHLA2Q9UM44 414 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 DAPP1Q9UN19 280 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 HS3ST3A1Q9Y663 406 aa8.13□□□□□ -1.11
CLIP1-214ENST00000540539 TRIOO75962 3097 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 TEX48A0A1B0GUV7 120 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 OTOL1A6NHN0 477 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-214ENST00000540539 CRYM-AS1A6NIL9 109 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 B9A039 149 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 C17orf112F2Z3M2 114 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 SLC31A1O15431 190 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 LDB3O75112 727 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 ADH5P11766 374 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 ATP1B2P14415 290 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-214ENST00000540539 QRFPP83859 136 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 SP6Q3SY56 376 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 CD300EQ496F6 205 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-214ENST00000540539 SPATA31B1PQ5VZV4 182 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 AMZ2Q86W34 360 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 OR10P1Q8NGE3 313 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 H0Y8G0 127 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 CLEC3AO75596 197 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 S1PR2O95136 353 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 VSIG8P0DPA2 414 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 FUT6P51993 359 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 MEF2BQ02080 365 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-214ENST00000540539 RUNX3Q13761 415 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 PMCHL1Q16048 86 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 ABHD17CQ6PCB6 329 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 LINC00346Q8IVM7 164 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 OR5A2Q8NGI9 324 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 SLC35A4Q96G79 324 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 JMJD8Q96S16 334 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 LINC00470Q9BZP3 86 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 C11orf1Q9H5F2 150 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 TMEM140Q9NV12 185 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 JPT1Q9UK76 154 aa8.12□□□□□ -1.11
CLIP1-214ENST00000540539 ALPK2Q86TB3 2170 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 ARID1BQ8NFD5 2236 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-214ENST00000540539 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 C7orf71A4D174 169 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 PLPP3O14495 311 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 RAD51DO75771 328 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 CST7O76096 145 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 CA2P00918 260 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 ZNF728P0DKX0 622 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 PPOXP50336 477 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 DYNLT3P51808 116 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 PSG4Q00888 419 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 ZNF74Q16587 644 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 PLAC9Q5JTB6 97 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 MRPL2Q5T653 305 aaKnown RBP8.11□□□□□ -1.11
CLIP1-214ENST00000540539 ASTLQ6HA08 431 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-214ENST00000540539 BRICD5Q6PL45 260 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 CPEB2Q7Z5Q1 589 aaKnown RBP8.11□□□□□ -1.11
CLIP1-214ENST00000540539 SULF2Q8IWU5 870 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 RTN4IP1Q8WWV3 396 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-214ENST00000540539 UBE2E3Q969T4 207 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 KLHDC7BQ96G42 594 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 RTN4RQ9BZR6 473 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 MRPL18Q9H0U6 180 aaKnown RBP8.11□□□□□ -1.11
CLIP1-214ENST00000540539 GNB4Q9HAV0 340 aa8.11□□□□□ -1.11
CLIP1-214ENST00000540539 MEGF11A6BM72 1044 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms