RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 DEFB119Q8N690 84 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 OR10AC1Q8NH08 325 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 OR1L1Q8NH94 360 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 COPS9Q8WXC6 57 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 TAF15Q92804 592 aaKnown RBP eCLIP7.67□□□□□ -1.18
YBX3-208ENST00000540447 CCL28Q9NRJ3 127 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 IGHV1-69-2A0A0G2JMI3 117 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 ADRA2AP08913 450 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 VSIG8P0DPA2 414 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 C2orf68Q2NKX9 166 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 ABHD17BQ5VST6 288 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 SLC25A28Q96A46 364 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 CNRIP1Q96F85 164 aaPredicted RBP7.67□□□□□ -1.18
YBX3-208ENST00000540447 SELENOKQ9Y6D0 94 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 A8MWV9 139 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 OR11H12B2RN74 326 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 CDAP32320 146 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 SSBP2P81877 361 aaPredicted RBP7.67□□□□□ -1.18
YBX3-208ENST00000540447 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.67□□□□□ -1.18
YBX3-208ENST00000540447 OR11H1Q8NG94 326 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 OR11H2Q8NH07 326 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 ZNF519Q8TB69 540 aa7.67□□□□□ -1.18
YBX3-208ENST00000540447 SF3B6Q9Y3B4 125 aaKnown RBP7.67□□□□□ -1.18
YBX3-208ENST00000540447 MSGN1A6NI15 193 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 LGALS3P17931 250 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 TM4SF1P30408 202 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 TEPPQ6URK8 271 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 ASB5Q8WWX0 329 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 ABHD14BQ96IU4 210 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 RNF208Q9H0X6 261 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 TAAR3PQ9P1P4 343 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 RBPJLQ9UBG7 517 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 MYO5AQ9Y4I1 1855 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 CD1AP06126 327 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 RPS11P62280 158 aaKnown RBP eCLIP7.66□□□□□ -1.18
YBX3-208ENST00000540447 RTL10Q7L3V2 364 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 OR4D5Q8NGN0 318 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 OR4C13Q8NGP0 309 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 ZNF479Q96JC4 524 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 OXGR1Q96P68 337 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 FOXD3Q9UJU5 478 aaPredicted RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 TRAV9-1A0A075B6T8 112 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 KIR2DS5A0A0G2JLQ3 304 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 A0A0G2JNG1 304 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 IGHV3-64DA0A0J9YX35 117 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 KIR2DS3K7RE56 304 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 KIR2DS5Q14953 304 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 NR2C2APQ86WQ0 139 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 PARP4Q9UKK3 1724 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 PRSS38A1L453 326 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 PRSS2P07478 247 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 FKBP2P26885 142 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 C10orf111Q8N326 155 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 VSTM2AQ8TAG5 236 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 NAA38Q9BRA0 125 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 MAP1LC3AQ9H492 121 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 ZNF708P17019 499 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 RPS15P62841 145 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 YBX1P67809 324 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 PSMG4Q5JS54 123 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 WFDC8Q8IUA0 241 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 TUSC5Q8IXB3 177 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 NT5CQ8TCD5 201 aa7.66□□□□□ -1.18
YBX3-208ENST00000540447 RCC1LQ96I51 464 aaKnown RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 CDCA3Q99618 268 aaPredicted RBP7.66□□□□□ -1.18
YBX3-208ENST00000540447 IGLV3-10A0A075B6K4 115 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 CTSVO60911 334 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 EML2O95834 649 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 HSD52Q0P140 79 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 C10orf113Q5VZT2 155 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 NOXO1Q8NFA2 376 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 OR4D11Q8NGI4 311 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 LINC00470Q9BZP3 86 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 GLRX2Q9NS18 164 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 PXMP4Q9Y6I8 212 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 DICER1Q9UPY3 1922 aaKnown RBP7.65□□□□□ -1.18
YBX3-208ENST00000540447 KIR2DS2P43631 304 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 RABIFP47224 123 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 TMEM160Q9NX00 188 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 SS18L2Q9UHA2 77 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 BOKQ9UMX3 212 aaPredicted RBP7.65□□□□□ -1.18
YBX3-208ENST00000540447 A0A1W2PPC1 479 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 GZMMP51124 257 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 MFAP4P55083 255 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 ZNF260Q3ZCT1 412 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 SEBOXQ9HB31 216 aaPredicted RBP7.65□□□□□ -1.18
YBX3-208ENST00000540447 GP6Q9HCN6 339 aa7.65□□□□□ -1.18
YBX3-208ENST00000540447 PSG2P11465 335 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 B4GALNT1Q00973 533 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 CLDND2Q8NHS1 167 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 SNRNP40Q96DI7 357 aaKnown RBP7.65□□□□□ -1.19
YBX3-208ENST00000540447 IL36RNQ9UBH0 155 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 MRPS18BQ9Y676 258 aaKnown RBP7.65□□□□□ -1.19
YBX3-208ENST00000540447 EDIL3O43854 480 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 LYZP61626 148 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 ZNF766Q5HY98 468 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 TCF23Q7RTU1 214 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 PRNTQ86SH4 94 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 OR52M1Q8NGK5 317 aa7.65□□□□□ -1.19
YBX3-208ENST00000540447 PLSCR2Q9NRY7 297 aa7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms