RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CEBPDP49716 269 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-213ENST00000540338 HAGHQ16775 308 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 PRAMEF5Q5TYX0 476 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 GFRALQ6UXV0 394 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 IGKV1D-13A0A0B4J2D9 117 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 METTL15P1P0C7V9 234 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 IGKV1-13P0DP09 117 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 OR10P1Q8NGE3 313 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 PLPPR2Q96GM1 343 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 HEYLQ9NQ87 328 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-213ENST00000540338 LILRA1O75019 489 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 HOXD4P09016 255 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-213ENST00000540338 GZMHP20718 246 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 MPV17P39210 176 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 TMEM56Q96MV1 263 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 PARD6AQ9NPB6 346 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 CYTL1Q9NRR1 136 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 DECR2Q9NUI1 292 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 TMEM56-RWDD3S4R434 201 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 EML5Q05BV3 1969 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 EML6Q6ZMW3 1958 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 FGF16O43320 207 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 PITX3O75364 302 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 PGA5P0DJD9 388 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 ATP6V0CP27449 155 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 PRDX2P32119 198 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 UBE2KP61086 200 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 COL10A1Q03692 680 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 Q3ZCU0 254 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 H1FOOQ8IZA3 346 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-213ENST00000540338 GPR146Q96CH1 333 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 ATP5SQ99766 215 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 C20orf24Q9BUV8 137 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 EGLN1Q9GZT9 426 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 HIPK2Q9H2X6 1198 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 RCC2Q9P258 522 aaKnown RBP9.15□□□□□ -0.94
CLIP1-213ENST00000540338 CLCF1Q9UBD9 225 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 NKX6-3A6NJ46 265 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 HBZP02008 142 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 MUC1P15941 1255 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-213ENST00000540338 SULT1A1P50225 295 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 ELLP55199 621 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-213ENST00000540338 KRTCAP3Q53RY4 240 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 AVPI1Q5T686 147 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 SSX9Q7RTT3 188 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 MOGAT3Q86VF5 341 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 OR1L1Q8NH94 360 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 NRIP2Q9BQI9 281 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 LYRM2Q9NU23 88 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-213ENST00000540338 ATP6V1G2-DDX39BF2Z307 99 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 C17orf112F2Z3M2 114 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 H0YL77 283 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 IFNA4P05014 189 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 LYL1P12980 280 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 LCN15Q6UWW0 184 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 TMEM108Q6UXF1 575 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 RBMS3Q6XE24 437 aaKnown RBP9.15□□□□□ -0.94
CLIP1-213ENST00000540338 Q6ZS49 121 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 CYYR1Q96J86 154 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 S1PR3Q99500 378 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 TREM2Q9NZC2 230 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 WIPI2Q9Y4P8 454 aa9.15□□□□□ -0.94
CLIP1-213ENST00000540338 CDRT15L2A8MXV6 281 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 C3orf80F5H4A9 247 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 NDUFB7P17568 137 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 KIR2DL2P43627 348 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-213ENST00000540338 TNFAIP6P98066 277 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-213ENST00000540338 TPRX1Q8N7U7 411 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 OR52L2PQ8NGH6 319 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 HS3ST6Q96QI5 342 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 NIPSNAP3BQ9BS92 247 aa9.15□□□□□ -0.95
CLIP1-213ENST00000540338 CACNA1DQ01668 2161 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 ZFP92A6NM28 416 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 M0R1X1 148 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 WNT9BO14905 357 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 PPP1CCP36873 323 aaKnown RBP9.14□□□□□ -0.95
CLIP1-213ENST00000540338 RAB31Q13636 194 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF273Q14593 569 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 PIP4P1Q86T03 277 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 LHFPL5Q8TAF8 219 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 RAB39BQ96DA2 213 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 C14orf79Q96F83 325 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 BOD1Q96IK1 185 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 LIME1Q9H400 295 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 NDRG3Q9UGV2 375 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 TRGV10A0A0A0MS01 117 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 ADH4P08319 380 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 TAS2R30P59541 319 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 GUCA2BQ16661 112 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 BTNL3Q6UXE8 466 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 PLPPR1Q8TBJ4 325 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 SLC35B3Q9H1N7 401 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 OR6C3Q9NZP0 311 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 GNG13Q9P2W3 67 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 SPTA1P02549 2419 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 PCP4L1A6NKN8 68 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 PDLIM3Q53GG5 364 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-213ENST00000540338 PINX1Q96BK5 328 aaKnown RBP9.14□□□□□ -0.95
CLIP1-213ENST00000540338 CACFD1Q9UGQ2 172 aa9.14□□□□□ -0.95
CLIP1-213ENST00000540338 A0A1W2PPV4 95 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms