RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 OR4F4Q96R69 305 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 CDX2Q99626 313 aaPredicted RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 NKX3-1Q99801 234 aaPredicted RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 TSSK6Q9BXA6 273 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 MRPL32Q9BYC8 188 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 NPFFR1Q9GZQ6 430 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 TMEM231Q9H6L2 316 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ST20Q9HBF5 79 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 TFCP2L1Q9NZI6 479 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 KLRF1Q9NZS2 232 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 FBXL17Q9UF56 701 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 YARS2Q9Y2Z4 477 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 RFNGQ9Y644 331 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ANK1P16157 1881 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ARID2Q68CP9 1835 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 ROBO1Q9Y6N7 1651 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 LY75O60449 1722 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 WDR90Q96KV7 1748 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 TECPR2O15040 1411 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 TRAV36DV7A0A075B6V5 113 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 TRAV1-1A0A0B4J248 108 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 DUXBA0A1W2PPF3 345 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 A0A1W2PRD5 423 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 F5H768 121 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 H0YL77 283 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 H3BRM9 83 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 KLF8O95600 359 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 MT-CO3P00414 261 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 HLA-HP01893 362 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 EIF4EP06730 217 aaKnown RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 PFN1P07737 140 aaKnown RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 AKAIN1P0CW23 69 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 FCGR2AP12318 317 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 IGFBP2P18065 325 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 SRD5A1P18405 259 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 NTSP30990 170 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 CDKN1AP38936 164 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 XCR1P46094 333 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 UQCRFS1P47985 274 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 CRISP3P54108 245 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 PSG9Q00887 426 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 Q0VG73 95 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 GINS1Q14691 196 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 OR8B8Q15620 311 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 ATP6AP1LQ52LC2 224 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 PAGE3Q5JUK9 113 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 SLC18B1Q6NT16 456 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 RGMBQ6NW40 437 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 DHRS13Q6UX07 377 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 ZNF788Q6ZQV5 615 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 PRIMA1Q86XR5 153 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 GPSM1Q86YR5 675 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 APRG1Q8IVJ8 170 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 MUC20Q8N307 709 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 IQCF1Q8N6M8 205 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 ZFP41Q8N8Y5 198 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 OR52E2Q8NGJ4 325 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 PPTC7Q8NI37 304 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 SCAMP5Q8TAC9 235 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 NTN5Q8WTR8 489 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 TWIST2Q8WVJ9 160 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 TMED6Q8WW62 240 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 NPIPB3Q92617 1050 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 MRPL24Q96A35 216 aaKnown RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 DYNLL2Q96FJ2 89 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 PCED1BQ96HM7 432 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 DERL3Q96Q80 235 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 GPER1Q99527 375 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 MRPL45Q9BRJ2 306 aaKnown RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 NUDT22Q9BRQ3 303 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 AGMATQ9BSE5 352 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 RTBDNQ9BSG5 229 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 SNRNP25Q9BV90 132 aaKnown RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 EBPLQ9BY08 206 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 CHRNA10Q9GZZ6 450 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 GTSF1LQ9H1H1 148 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 POPDC3Q9HBV1 291 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 UBE2TQ9NPD8 197 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 WSB2Q9NYS7 404 aaPredicted RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 C11orf21Q9P2W6 132 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 GALPQ9UBC7 116 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 B4GALT7Q9UBV7 327 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 FBXW11Q9UKB1 542 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 VDAC3Q9Y277 283 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 WSB1Q9Y6I7 421 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 ALPK3Q96L96 1907 aa4.67□□□□□ -1.66
CD44-236ENST00000533222 CHD3Q12873 2000 aaKnown RBP4.67□□□□□ -1.66
CD44-236ENST00000533222 NRXN2Q9P2S2 1712 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 POLR2AP24928 1970 aaKnown RBP4.66□□□□□ -1.66
CD44-236ENST00000533222 TMEM272A0A1B0GTI8 110 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 FAM90A18PA6NE21 464 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 FAM90A16PA6NEW6 464 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 FAM90A9PA6NNJ1 464 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 FAM90A5PA8MXJ8 464 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 TMEM250H0YL14 139 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 J3KT08 172 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 RAMP1O60894 148 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 ARL6IP5O75915 188 aa4.66□□□□□ -1.66
CD44-236ENST00000533222 ACTL6BO94805 426 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms