RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GNRHRP30968 328 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 GPR6P46095 362 aaPredicted RBP17.39■□□□□ 0.38
VPS28-208ENST00000527797 C17orf58Q2M2W7 97 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 C11orf88Q6PI97 169 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 NLRC3Q7RTR2 1065 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 TCF23Q7RTU1 214 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 SGPP2Q8IWX5 399 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 CCDC71LQ8N9Z2 235 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 UXS1Q8NBZ7 420 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 C19orf12Q9NSK7 152 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 TAS2R3Q9NYW6 316 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 FLNCQ14315 2725 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 F2RL2O00254 374 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 GPR31O00270 319 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 CD34P28906 385 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 CD300CQ08708 224 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 GNMTQ14749 295 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 LTC4SQ16873 150 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 PHLDA2Q53GA4 152 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 FAM185AQ8N0U4 392 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 ZNF295-AS1Q8N0V1 137 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 OR11H7Q8NGC8 314 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 OR8B3Q8NGG8 313 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 CASTOR1Q8WTX7 329 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 OR8B2Q96RD0 313 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 CCL28Q9NRJ3 127 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 SLC2A9Q9NRM0 540 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 JPT1Q9UK76 154 aa17.39■□□□□ 0.37
VPS28-208ENST00000527797 IGHV3-43A0A0B4J1X8 118 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 CRYM-AS1A6NIL9 109 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 A8MV72 311 aaPredicted RBP17.38■□□□□ 0.37
VPS28-208ENST00000527797 DUS4LO95620 317 aaKnown RBP17.38■□□□□ 0.37
VPS28-208ENST00000527797 IGHV3-43DP0DP04 118 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 PPP1CCP36873 323 aaKnown RBP17.38■□□□□ 0.37
VPS28-208ENST00000527797 CD83Q01151 205 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 MITD1Q8WV92 249 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 RTN4IP1Q8WWV3 396 aaPredicted RBP17.38■□□□□ 0.37
VPS28-208ENST00000527797 NEIL1Q96FI4 390 aaPredicted RBP17.38■□□□□ 0.37
VPS28-208ENST00000527797 ST6GAL2Q96JF0 529 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 PHB2Q99623 299 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 GAL3ST2Q9H3Q3 398 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 GNG12Q9UBI6 72 aa17.38■□□□□ 0.37
VPS28-208ENST00000527797 HSD17B6O14756 317 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 GPR37O15354 613 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 WNT2P09544 360 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 SUPT4H1P63272 117 aaKnown RBP17.37■□□□□ 0.37
VPS28-208ENST00000527797 SLC9A3R2Q15599 337 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 ZNF841Q6ZN19 808 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 ZNF818PQ6ZRF7 136 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 OR2AK2Q8NG84 335 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 PARP12Q9H0J9 701 aaKnown RBP17.37■□□□□ 0.37
VPS28-208ENST00000527797 LINC00574Q9H8X3 128 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 KCNIP3Q9Y2W7 256 aa17.37■□□□□ 0.37
VPS28-208ENST00000527797 IGHV4-39P01824 125 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 HNRNPCP07910 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
VPS28-208ENST00000527797 OR8U9P0C7N5 309 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 OMGP23515 440 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 S100GP29377 79 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 RND3P61587 244 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 ZNF273Q14593 569 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 TMEM200BQ69YZ2 307 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 FAM53AQ6NSI3 398 aaPredicted RBP17.36■□□□□ 0.37
VPS28-208ENST00000527797 LDLRAD3Q86YD5 345 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 CMTM1Q8IZ96 169 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 OR8U1Q8NH10 309 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 NAA60Q9H7X0 242 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 IDI2-AS1Q9NZ38 188 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 MGAT4CQ9UBM8 478 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 TRBV23-1A0A0A0MS06 115 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 YPEL1O60688 119 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 RGS11O94810 467 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 IFNA2P01563 188 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 CXCL3P19876 107 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 COL8A1P27658 744 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 LOXL3P58215 753 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 TMEM30BQ3MIR4 351 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 MORN2Q502X0 79 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 AKR1E2Q96JD6 320 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 ZNF714Q96N38 554 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 YPEL2Q96QA6 119 aa17.36■□□□□ 0.37
VPS28-208ENST00000527797 PATZ1Q9HBE1 687 aaKnown RBP17.36■□□□□ 0.37
VPS28-208ENST00000527797 RANGRFQ9HD47 186 aaPredicted RBP17.36■□□□□ 0.37
VPS28-208ENST00000527797 CHD6Q8TD26 2715 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 HRNRQ86YZ3 2850 aaPredicted RBP17.35■□□□□ 0.37
VPS28-208ENST00000527797 MPPED1O15442 326 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 ANXA3P12429 323 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 BVESQ8NE79 360 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 OR10A7Q8NGE5 316 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 COQ8AQ8NI60 647 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 EDARADDQ8WWZ3 215 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 KCNS2Q9ULS6 477 aa17.35■□□□□ 0.37
VPS28-208ENST00000527797 A0A0B4J2A0 478 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 SLC22A5O76082 557 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 PDLIM4P50479 330 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 ZNF525Q8N782 197 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 OR52M1Q8NGK5 317 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 GFOD1Q9NXC2 390 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 SHPKQ9UHJ6 478 aa17.34■□□□□ 0.37
VPS28-208ENST00000527797 GOSR2O14653 212 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 WDR25Q64LD2 544 aaPredicted RBP17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms