RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CISHQ9NSE2 258 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 UQCC1Q9NVA1 299 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 MRPL16Q9NX20 251 aaKnown RBP1.82□□□□□ -2.12
CD44-216ENST00000525293 DOK5Q9P104 306 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 ZNF319Q9P2F9 582 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 SLC23A2Q9UGH3 650 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 PRNDQ9UKY0 176 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 MMP17Q9ULZ9 603 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 BOKQ9UMX3 212 aaPredicted RBP1.82□□□□□ -2.12
CD44-216ENST00000525293 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.82□□□□□ -2.12
CD44-216ENST00000525293 ORC6Q9Y5N6 252 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 V9GYS6 101 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 HCFC1P51610 2035 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 FMN1Q68DA7 1419 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 NAV1Q8NEY1 1877 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 GRIN2BQ13224 1484 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 CCDC141Q6ZP82 1450 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 PRXQ9BXM0 1461 aa1.82□□□□□ -2.12
CD44-216ENST00000525293 FAM135AQ9P2D6 1515 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 IGLV3-22A0A075B6J6 115 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 IGHV3-38A0A0C4DH36 116 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ZNF816-ZNF321PA0A0X1KG74 233 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 A0A1B0GTH9 108 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 PNMA8CA0A1B0GUJ8 204 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 DAPL1A0PJW8 107 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 FABP5P3A8MUU1 101 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ZNF705EA8MWA4 302 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 C9JAW5 83 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 H3BMQ9 156 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 CCDC179H3BU77 68 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 K7EQS6 105 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 TNFRSF11BO00300 401 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 FCN1O00602 326 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 CXCL13O43927 109 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 FKBP6O75344 327 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 PGLYRP1O75594 196 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 GRAP2O75791 330 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 SNAPC5O75971 98 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 YIF1AO95070 293 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 NRASP01111 189 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 IGKV1D-16P01601 117 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 MAS1P04201 325 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 CD2P06729 351 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 UCHL1P09936 223 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 H2BFMP0C1H6 154 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 GKN3PP0CG01 181 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 LINC00694P0DN24 101 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 GZMBP10144 247 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 IL12AP29459 219 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 CMPK1P30085 196 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 MIPP30301 263 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 IL2RGP31785 369 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ELK3P41970 407 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR1E2P47887 323 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 RPL29P47914 159 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 EMDP50402 254 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 LHX2P50458 406 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OSTNP61366 133 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 HSPE1P61604 102 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 DCDP81605 110 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 HSD52Q0P140 79 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 TMEM267Q0VDI3 215 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 SRSF9Q13242 221 aaKnown RBP eCLIP1.81□□□□□ -2.12
CD44-216ENST00000525293 JOSD1Q15040 202 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 KIAA0040Q15053 153 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 RHEBQ15382 184 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 UBE2V2Q15819 145 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 DUSP5Q16690 384 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 HIST3H3Q16695 136 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ACOT6Q3I5F7 207 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 KRTAP13-3Q3SY46 172 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 LCE3AQ5TA76 89 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 NXNL2Q5VZ03 156 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 TEX36Q5VZQ5 186 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OTPQ5XKR4 325 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OLFML2AQ68BL7 652 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 GLT8D1Q68CQ7 371 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ZFAND6Q6FIF0 208 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR2T5Q6IEZ7 315 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 RPL22L1Q6P5R6 122 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 TBPL2Q6SJ96 375 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ALKAL2Q6UX46 152 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 IL34Q6ZMJ4 242 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ZNF705AQ6ZN79 300 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 COX8CQ7Z4L0 72 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 GAPTQ8N292 157 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 C5orf17Q8NAS9 161 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR51A2Q8NGJ7 313 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR10R2Q8NGX6 335 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR2T29Q8NH02 315 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ZNF420Q8TAQ5 688 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 VN1R17PQ8TDU5 208 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 FAM151AQ8WW52 585 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 SRSF12Q8WXF0 261 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 S100ZQ8WXG8 99 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 KLK6Q92876 244 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 SLC35E1Q96K37 410 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 CARD19Q96LW7 228 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 PSMB7Q99436 277 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 SORT1Q99523 831 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms