RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 TMEM56Q96MV1 263 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 SSBP4Q9BWG4 385 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF71Q9NQZ8 489 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 PRR13Q9NZ81 148 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 MRPS16Q9Y3D3 137 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 C21orf140B9A014 251 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 SYNGR2O43760 224 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 FCGR3AP08637 254 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 ATP6V0CP27449 155 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 CDKN2AP42771 156 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 YBX1P67809 324 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 WDR34Q96EX3 536 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 KCNE5Q9UJ90 142 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 NDUFS6O75380 124 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 KBTBD11O94819 623 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 CFDP00746 253 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 GAPDHP04406 335 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 FUT3P21217 361 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 RNFT1Q5M7Z0 435 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 OR4D9Q8NGE8 314 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 TMEM186Q96B77 213 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 DEFB127Q9H1M4 99 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 LILRA5A6NI73 299 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 PRRT4C9JH25 899 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 B4GALT1P15291 398 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 PMELP40967 661 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 B4GALNT1Q00973 533 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 INSM1Q01101 510 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF260Q3ZCT1 412 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 OR5R1Q8NH85 324 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 TMEM204Q9BSN7 226 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF107Q9UII5 783 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 SHROOM3Q8TF72 1996 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 CABIN1Q9Y6J0 2220 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 TMEM8BA6NDV4 472 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 CTSDP07339 412 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 FAM157BP0CG42 384 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 KIR2DL1P43626 348 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 KIR2DL2P43627 348 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 EWSR1Q01844 656 aaKnown RBP eCLIP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 WNT2BQ93097 391 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 C4orf45Q96LM5 186 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 GTSF1LQ9H1H1 148 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 TCFL5Q9UL49 500 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SPTA1P02549 2419 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 LOC389332A0A1B0GUA5 103 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 CXCL13O43927 109 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 MPZL1O95297 269 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 PSMG4Q5JS54 123 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 TPTE2P1Q5T6R2 138 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 THSD4Q6ZMP0 1018 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SLC25A42Q86VD7 318 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 STXBP6Q8NFX7 210 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR4P4Q8NGL7 312 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 BAHD1Q8TBE0 780 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 TXNDC17Q9BRA2 123 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SVILO95425 2214 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 A0A087WUJ7 227 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SPAARA0A1B0GVQ0 90 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 DHHO43323 396 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 RNASE1P07998 156 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 ERGP11308 486 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SRIP30626 198 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 HMGA2P52926 109 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 DPTQ07507 201 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SMIM21Q3B7S5 101 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF766Q5HY98 468 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 NHLRC3Q5JS37 347 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR10X1Q8NGY0 326 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR11H12B2RN74 326 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 H0YL77 283 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 FGF5P12034 268 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 VDAC1P21796 283 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 GLIPR1P48060 266 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 RPS4XP62701 263 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 FMODQ06828 376 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 SSPNQ14714 243 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 NR2C2APQ86WQ0 139 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 FAM219AQ8IW50 185 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR8G5Q8NG78 346 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR11H1Q8NG94 326 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR2I1PQ8NGU4 316 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR11H2Q8NH07 326 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR4C3Q8NH37 302 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 KISS1RQ969F8 398 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 PERPQ96FX8 193 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 PRDM13Q9H4Q3 707 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 NEU3Q9UQ49 428 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 OR51B2Q9Y5P1 312 aa7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 COL11A1P12107 1806 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-218ENST00000513024 CHST1O43916 411 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 CXorf1O96002 111 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 AGAP20933 346 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 CLDN15P56746 228 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 CSRP2Q16527 193 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF770Q6IQ21 691 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 ZDHHC23Q8IYP9 409 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 ST8SIA1Q92185 356 aa7.66□□□□□ -1.18
LIMCH1-218ENST00000513024 OXGR1Q96P68 337 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms