RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PPIAL4GP0DN37 164 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR13C7P0DN81 318 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CD37P11049 281 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 LAMP1P11279 417 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PGAM2P15259 253 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NCK1P16333 377 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 GGT1P19440 569 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TPSB2P20231 275 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NFYAP23511 347 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZBTB25P24278 435 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 IVDP26440 423 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 HTR2AP28223 471 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 KDELR2P33947 212 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ACVR1BP36896 505 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RPS10P46783 165 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC6A8P48029 635 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MARCKSL1P49006 195 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 INPP1P49441 399 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RGS4P49798 205 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF140P52738 457 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC25A1P53007 311 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MFAP2P55001 183 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 BIDP55957 195 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 KRTAP12-2P59991 146 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TPI1P60174 286 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CDC42P60953 191 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RPL32P62910 135 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CCL7P80098 99 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PAX5Q02548 391 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PAX2Q02962 417 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SMAGPQ0VAQ4 97 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ST3GAL3Q11203 375 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR1C1Q15619 314 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TPSAB1Q15661 275 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 VAMP3Q15836 100 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 GABRA6Q16445 453 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SNRNP35Q16560 246 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM255AQ5JRV8 349 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SAMD4BQ5PRF9 694 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 UTF1Q5T230 341 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 C1orf194Q5T5A4 169 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 DCAF12Q5T6F0 453 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF57Q68EA5 555 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR4F3Q6IEY1 312 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR2A2Q6IF42 318 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR10K2Q6IF99 312 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 DNM1P34Q6PK57 102 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM205Q6UW68 189 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 EPGNQ6UW88 154 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CD164L2Q6UWJ8 174 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 B3GLCTQ6Y288 498 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZCCHC23Q6ZST2 131 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 Q6ZVH6 145 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TCF24Q7RTU0 167 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR2W3Q7Z3T1 314 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF571Q7Z3V5 609 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TMED4Q7Z7H5 227 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 LRP11Q86VZ4 500 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC30A8Q8IWU4 369 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 LAX1Q8IWV1 398 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 H1FOOQ8IZA3 346 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CMTM8Q8IZV2 173 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 Q8N402 240 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 C17orf78Q8N4C9 275 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF525Q8N782 197 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 WFDC11Q8NEX6 87 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR11H1Q8NG94 326 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR51D1Q8NGF3 324 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR1S2Q8NGQ3 325 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR1N2Q8NGR9 330 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR13C9Q8NGT0 318 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR11H2Q8NH07 326 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CNIH3Q8TBE1 160 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 M1APQ8TC57 530 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC7A13Q8TCU3 470 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CASTOR1Q8WTX7 329 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TNFAIP8L1Q8WVP5 186 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM239Q8WW34 195 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 LCN9Q8WX39 176 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NRGNQ92686 78 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ROPN1LQ96C74 230 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZMYND19Q96E35 227 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MALSU1Q96EH3 234 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PHYHIPLQ96FC7 376 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 GALNT14Q96FL9 552 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF414Q96IQ9 312 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35E1Q96K37 410 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35G5Q96KT7 338 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CCDC115Q96NT0 180 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SIGLEC12Q96PQ1 595 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 S1PR3Q99500 378 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 S100A13Q99584 98 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PITX2Q99697 317 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 HIST1H2BLQ99880 126 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL45Q9BRJ2 306 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MIEN1Q9BRT3 115 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CBWD1Q9BRT8 395 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RIOK2Q9BVS4 552 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ACTR3CQ9C0K3 210 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CXXC4Q9H2H0 198 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms