RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	SOHLH1	Q5JUK2	328 aa		13.31	□□□□□ -0.28
BRD9-208	ENST00000489816	SHE	Q5VZ18	495 aa		13.31	□□□□□ -0.28
BRD9-208	ENST00000489816	HIST1H2BA	Q96A08	127 aa		13.31	□□□□□ -0.28
BRD9-208	ENST00000489816	FER1L6-AS2	Q96M78	137 aa		13.31	□□□□□ -0.28
BRD9-208	ENST00000489816	MMP24	Q9Y5R2	645 aa		13.31	□□□□□ -0.28
BRD9-208	ENST00000489816	KALRN	O60229	2985 aa		13.31	□□□□□ -0.28
BRD9-208	ENST00000489816	IGKV1-39	P01597	117 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	IGKV1D-39	P04432	117 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	HLA-DRB3	P79483	266 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	AES	Q08117	197 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	SPANXN5	Q5MJ07	72 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	LCN15	Q6UWW0	184 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	LYPD6B	Q8NI32	183 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	VSIR	Q9H7M9	311 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	COL27A1	Q8IZC6	1860 aa	Predicted RBP	13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	SPAAR	A0A1B0GVQ0	90 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	PSPN	O60542	156 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	KRAS	P01116	189 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	ID3	Q02535	119 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	PSG7	Q13046	419 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	ZNF266	Q14584	549 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	TBC1D28	Q2M2D7	210 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	PRAMEF6	Q5VXH4	476 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	BTNL3	Q6UXE8	466 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	RBMS3	Q6XE24	437 aa	Known RBP	13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	OR10V1	Q8NGI7	309 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	PMEL	P40967	661 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	RND3	P61587	244 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	SRPX	P78539	464 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	ARL16	Q0P5N6	197 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	HABP2	Q14520	560 aa	Predicted RBP	13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	FDCSP	Q8NFU4	85 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	SLC35B3	Q9H1N7	401 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	MPC1	Q9Y5U8	109 aa		13.3	□□□□□ -0.28
BRD9-208	ENST00000489816	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	TESK1	Q15569	626 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	OR8G2P	Q6IF36	304 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	VWA1	Q6PCB0	445 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM185A	Q8N0U4	392 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	OR1L1	Q8NH94	360 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	ZNF98	A6NK75	572 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	ZFP92	A6NM28	416 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	SULT1A1	P50225	295 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	AKR1C8P	Q5T2L2	129 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	ZNF343	Q6P1L6	599 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816		Q6P435	159 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	SPSB3	Q6PJ21	355 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	DCTN5	Q9BTE1	182 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	SLC25A31	Q9H0C2	315 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	C11orf1	Q9H5F2	150 aa		13.29	□□□□□ -0.28
BRD9-208	ENST00000489816	RAMP3	O60896	148 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	SMPD2	O60906	423 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	SS18L1	O75177	396 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	IGLV2-14	P01704	120 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	COX5B	P10606	129 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	WT1	P19544	449 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	OR3A1	P47881	315 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	H1FOO	Q8IZA3	346 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	OR52L2P	Q8NGH6	319 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	RBFOX3	A6NFN3	312 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	OR5B21	A6NL26	309 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816		J3QT63	122 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	NDUFA2	O43678	99 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	S100A6	P06703	90 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	ZNF14	P17017	642 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	ELL	P55199	621 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FOXF2	Q12947	444 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	SAXO1	Q8IYX7	474 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	ZNF295-AS1	Q8N0V1	137 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	CYB561D1	Q8N8Q1	229 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	BIN3	Q9NQY0	253 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	GNG13	Q9P2W3	67 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	RNF115	Q9Y4L5	304 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	ARFGEF3	Q5TH69	2177 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	RELN	P78509	3460 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	SPTA1	P02549	2419 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A10P	A6NDY2	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A18P	A6NE21	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A16P	A6NEW6	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A20P	A6NIJ5	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A8P	A6NJQ4	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A7P	A6NKC0	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A22P	A8MWA6	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A12P	A8MX19	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A5P	A8MXJ8	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A23P	A8MXZ1	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816		H0Y980	276 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A15P	P0C7V4	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A13P	P0C7W8	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A14P	P0C7W9	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	FAM90A24P	P0C7X0	464 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	IL24	Q13007	206 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	RTL8A	Q9BWD3	113 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	RNF122	Q9H9V4	155 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	ATPIF1	Q9UII2	106 aa		13.28	□□□□□ -0.28
BRD9-208	ENST00000489816	PITX3	O75364	302 aa		13.27	□□□□□ -0.28
BRD9-208	ENST00000489816	IGKV1-5	P01602	117 aa		13.27	□□□□□ -0.28
BRD9-208	ENST00000489816	CTXN2	P0C2S0	81 aa		13.27	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms