RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 NQO2P16083 231 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 CRABP1P29762 137 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 UGT2B10P36537 528 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 LINC00313P59037 77 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 STX3Q13277 289 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 SKP2Q13309 424 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 OR4D1Q15615 310 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 FBXO48Q5FWF7 155 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 TIMM23BQ5SRD1 257 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 SDIM1Q6ZPB5 146 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 ZNF767PQ75MW2 155 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 TRIML2Q8N7C3 387 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 SPPL2BQ8TCT7 592 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 ACBD6Q9BR61 282 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 ZNF251Q9BRH9 671 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 UPK3BQ9BT76 320 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 SLC19A3Q9BZV2 496 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 NRBP2Q9NSY0 501 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 WASHC3Q9Y3C0 194 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 MIA3Q5JRA6 1907 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 ADAMTSL3P82987 1691 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 PTPRKQ15262 1439 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 RAB3GAP2Q9H2M9 1393 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 A0A0G2JQZ4 141 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 A0A0J9YX75 114 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 ZNF879B4DU55 563 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 MKRN2OSH3BPM6 223 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 H3BRN7 92 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 CRXO43186 299 aaPredicted RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 CDK14O94921 469 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 ASS1P00966 412 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 GZMBP10144 247 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 AKR1C4P17516 323 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 CBX5P45973 191 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 HSPA13P48723 471 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 PSMB3P49720 205 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 PSMD7P51665 324 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 EMP2P54851 167 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 TSPEAR-AS2P59090 65 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 DYNLL1P63167 89 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 TSPAN31Q12999 210 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 FLOT2Q14254 428 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 PAFAH1B3Q15102 231 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 TPRXLQ17RH7 258 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 TMEM249Q2WGJ8 235 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 MRPL51Q4U2R6 128 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 ACSBG2Q5FVE4 666 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 RBM48Q5RL73 367 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 N4BP2L1Q5TBK1 243 aaPredicted RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 SELENOHQ8IZQ5 122 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 TMEM75Q8N9X5 138 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 OR5D18Q8NGL1 313 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 OR4P4Q8NGL7 312 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 OR4C16Q8NGL9 310 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 RNASEH2CQ8TDP1 164 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 DTD1Q8TEA8 209 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 GTF2H4Q92759 462 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 CCDC127Q96BQ5 260 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 TMEM56Q96MV1 263 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 ZNF426Q9BUY5 554 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 ZNF471Q9BX82 626 aaPredicted RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 CDCA4Q9BXL8 241 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 GNB1LQ9BYB4 327 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 CHST5Q9GZS9 411 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 GTSF1LQ9H1H1 148 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 CXCL16Q9H2A7 254 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 SMDT1Q9H4I9 107 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 C11orf1Q9H5F2 150 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 DMAC2Q9NW81 257 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 FAM206AQ9NX38 181 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 TAS2R9Q9NYW1 312 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 MRPS16Q9Y3D3 137 aaKnown RBP0.6□□□□□ -2.31
VPS50-216ENST00000484954 SYNRGQ9UMZ2 1314 aa0.6□□□□□ -2.31
VPS50-216ENST00000484954 COL4A2P08572 1712 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 IGHV3-73A0A0B4J1V6 119 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 GOLGA8IPA6NC78 632 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 SIGLEC16A6NMB1 481 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 A8MWP6 167 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 K7ERQ8 282 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 SYNGR1O43759 233 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 TNFAIP8O95379 198 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 SOD1P00441 154 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 TPM1P09493 284 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 PPP1CCP36873 323 aaKnown RBP0.59□□□□□ -2.31
VPS50-216ENST00000484954 SPAM1P38567 509 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 DAPP51397 102 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 GABARAPL2P60520 117 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 FGF12P61328 243 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 GTF2BQ00403 316 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 ZNF117Q03924 483 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 SLAMF1Q13291 335 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 MESTQ5EB52 335 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 LGALS9CQ6DKI2 356 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 LRRC6Q86X45 466 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 DYNC2LI1Q8TCX1 351 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 IFT81Q8WYA0 676 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 GALMQ96C23 342 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 CCDC124Q96CT7 223 aaKnown RBP0.59□□□□□ -2.31
VPS50-216ENST00000484954 DNAJC30Q96LL9 226 aa0.59□□□□□ -2.31
VPS50-216ENST00000484954 CYTH2Q99418 400 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms