RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 H1FOOQ8IZA3 346 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-225ENST00000481502 FAM185AQ8N0U4 392 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-225ENST00000481502 DUSP18Q8NEJ0 188 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 CCDC107Q8WV48 283 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 GCDHQ92947 438 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-225ENST00000481502 KIRREL1Q96J84 757 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 AKR1E2Q96JD6 320 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 Q96MF0 132 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 GINS4Q9BRT9 223 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 HRASLSQ9HDD0 168 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 OR2S2Q9NQN1 319 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 ABCB10Q9NRK6 738 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 OR2W1Q9Y3N9 320 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 SESN1Q9Y6P5 492 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 DSCAML1Q8TD84 2053 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 TACC2O95359 2948 aa6.79□□□□□ -1.32
SYNE1-225ENST00000481502 IGKV1D-8A0A087WSZ0 117 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 PIGBOS1A0A0B4J2F0 54 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 FAM157AC9JC47 383 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 PLA2G10O15496 165 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 PHF1O43189 567 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-225ENST00000481502 B3GALNT1O75752 331 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 TFF1P04155 84 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 ZNF735P0CB33 412 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 CEACAM6P40199 344 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 PRRX1P54821 245 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 ZNF273Q14593 569 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 HERPUD1Q15011 391 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 RBMS2Q15434 407 aaKnown RBP6.78□□□□□ -1.32
SYNE1-225ENST00000481502 TMEM249Q2WGJ8 235 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 METTL11BQ5VVY1 283 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 CYB5R2Q6BCY4 276 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 FAM71F2Q6NXP2 309 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 C11orf88Q6PI97 169 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 GLCCI1Q86VQ1 547 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 TPRX1Q8N7U7 411 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 BEND2Q8NDZ0 799 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 OR11H6Q8NGC7 330 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 OR4C16Q8NGL9 310 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 OR13D1Q8NGV5 346 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 OR9G1Q8NH87 305 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 ZFAND1Q8TCF1 268 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 TMEM186Q96B77 213 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 MOB3AQ96BX8 217 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 ALX4Q9H161 411 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-225ENST00000481502 TMEM133Q9H2Q1 129 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 EHFQ9NZC4 300 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 PIPOXQ9P0Z9 390 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 GNG12Q9UBI6 72 aa6.78□□□□□ -1.32
SYNE1-225ENST00000481502 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.78□□□□□ -1.32
SYNE1-225ENST00000481502 ASH1LQ9NR48 2969 aaKnown RBP6.78□□□□□ -1.32
SYNE1-225ENST00000481502 KIAA2026Q5HYC2 2103 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 MED13LQ71F56 2210 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 IGKV1-6A0A0C4DH72 117 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 MEIS3P1A6NDR6 274 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 RNF223E7ERA6 249 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 SDCBPO00560 298 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 NDUFB6O95139 128 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 PPYP01298 95 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 PMP2P02689 132 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 AMY2AP04746 511 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 S100GP29377 79 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 FCGR2CP31995 323 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 SSTR5P35346 364 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 RBMXP38159 391 aaKnown RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 LUMP51884 338 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 ZNF137PP52743 207 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 UBE2MP61081 183 aaKnown RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 LCN2P80188 198 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 IFITM3Q01628 133 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 TAGLNQ01995 201 aaKnown RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 RGS21Q2M5E4 152 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 IGSF11Q5DX21 431 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 DCAF12L2Q5VW00 463 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 FAHD2BQ6P2I3 314 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 ZNF782Q6ZMW2 699 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 SLC25A48Q6ZT89 311 aaKnown RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 TCTEX1D1Q8N7M0 179 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 ZDHHC22Q8N966 263 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 WFDC11Q8NEX6 87 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 OR1L1Q8NH94 360 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 IL1F10Q8WWZ1 152 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 FAHD2AQ96GK7 314 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 AGMATQ9BSE5 352 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 ZNF2Q9BSG1 426 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 SIRPDQ9H106 197 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 DPAGT1Q9H3H5 408 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 NARFLQ9H6Q4 476 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 LPAR2Q9HBW0 351 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 FAM212BQ9NTI7 297 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-225ENST00000481502 TMEM160Q9NX00 188 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 ING3Q9NXR8 418 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 RDH8Q9NYR8 311 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 ZNF69Q9UC07 566 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 TBC1D24Q9ULP9 559 aa6.77□□□□□ -1.33
SYNE1-225ENST00000481502 PDZD2O15018 2839 aa6.76□□□□□ -1.33
SYNE1-225ENST00000481502 FAM240BA0A1B0GVZ2 78 aa6.76□□□□□ -1.33
SYNE1-225ENST00000481502 FAM172BPA6NC97 362 aa6.76□□□□□ -1.33
SYNE1-225ENST00000481502 OOSP1A8MZH6 123 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms