RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 OR5H2Q8NGV7 314 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 OR51H1Q8NH63 302 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 C15orf40Q8WUR7 153 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 RASSF5Q8WWW0 418 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 BMFQ96LC9 184 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 HOPXQ9BPY8 73 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 CHAC1Q9BUX1 264 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 TMEM109Q9BVC6 243 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 ULBP3Q9BZM4 244 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM96AQ9H5X1 160 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 NOX3Q9HBY0 568 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 ARMC1Q9NVT9 282 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 PRELID3BQ9Y3B1 194 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 TMEM131Q92545 1883 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 MYO15BQ96JP2 1530 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 LOC105371267A0A1B0GV96 52 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF878C9JN71 531 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 F5H5P2 479 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 OR7C1O76099 320 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 IFNA21P01568 189 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 MAS1P04201 325 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM228BP0C875 321 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 OR12D1P0DN82 309 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 REG1BP48304 166 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF136P52737 540 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 TFAMQ00059 246 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 FABP5Q01469 135 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ACOT6Q3I5F7 207 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM78AQ5JUQ0 283 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 TMEM215Q68D42 235 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ZIC4Q8N9L1 334 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 OR2Z1Q8NG97 314 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 YIPF5Q969M3 257 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 FXYD5Q96DB9 178 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 STARD4Q96DR4 205 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ANKRD36BP1Q96IX9 119 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF382Q96SR6 550 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 DDA1Q9BW61 102 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 BOLA2Q9H3K6 86 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 ENY2Q9NPA8 101 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 OPTCQ9UBM4 332 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 TAC3Q9UHF0 121 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 LINC00527Q9UJ94 153 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 BTRCQ9Y297 605 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 SLC22A7Q9Y694 548 aa3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 PCF11O94913 1555 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-206ENST00000430086 A0A087WUJ7 227 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 LOC102724200A0A096LPH7 203 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 TRAV8-1A0A0A6YYK1 113 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 IGHV5-10-1A0A0J9YXX1 117 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 GMNCA6NCL1 334 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 NACADO15069 1562 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 IFNA1P01562 189 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 REG1AP05451 166 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 IGHV1-8P0DP01 117 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 IFI30P13284 250 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 ADRB3P13945 408 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 GTF2F2P13984 249 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 KCNE1P15382 129 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 CBR1P16152 277 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 ZNF708P17019 499 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 ZNF83P51522 516 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 HLA-DRB3P79483 266 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 TSNQ15631 228 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 LCN8Q6JVE9 175 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 C3orf33Q6P1S2 294 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 CYHR1Q6ZMK1 362 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 SHISA6Q6ZSJ9 500 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 NEGR1Q7Z3B1 354 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 PRNTQ86SH4 94 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 PDPNQ86YL7 162 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 PCP2Q8IVA1 136 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 C1orf158Q8N1D5 194 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 ZNF645Q8N7E2 425 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 SLC25A29Q8N8R3 303 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 OR2V2Q96R30 315 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 FGF23Q9GZV9 251 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 IFI27L2Q9H2X8 130 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 OR52D1Q9H346 318 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 BIN3Q9NQY0 253 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 FIS1Q9Y3D6 152 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 VWA8A3KMH1 1905 aa3.4□□□□□ -1.87
CCDC88A-206ENST00000430086 CCDC144AA2RUR9 1427 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 EEF1E1-BLOC1S5C9J1V9 151 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 TMEM250H0YL14 139 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 C15orf65H3BRN8 121 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 EEF1E1O43324 174 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 IGLV2-8P01709 118 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 CTSEP14091 401 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 HIST1H1TP22492 207 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 INPP1P49441 399 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 TMEM33P57088 247 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 TCTAP57738 103 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 RPS24P62847 133 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 TNFRSF9Q07011 255 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 PRDX4Q13162 271 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 SLC16A13Q7RTY0 426 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 ZNF550Q7Z398 422 aa3.39□□□□□ -1.87
CCDC88A-206ENST00000430086 GLT6D1Q7Z4J2 308 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms