RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 ELOVL5Q9NYP7 299 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 SAA2-SAA4A0A096LPE2 208 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 IGKV1D-33P01593 117 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 IGKV1-33P01594 117 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 PGCP20142 388 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 CHRNB4P30926 498 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 NNATQ16517 81 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 LINC00346Q8IVM7 164 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 WDFY1Q8IWB7 410 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 VN1R1Q9GZP7 353 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 LANCL2Q9NS86 450 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 CENPMQ9NSP4 180 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 PLEKHJ1Q9NW61 149 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 A0A0J9YY10 115 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 PRSS38A1L453 326 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 J3QR06 171 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 NBEAP1P0C6P0 100 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 GLI4P10075 376 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 PSMB3P49720 205 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 GRB2P62993 217 aaKnown RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 VWA1Q6PCB0 445 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 ZIC4Q8N9L1 334 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 ZFP62Q8NB50 900 aaPredicted RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 LSM10Q969L4 123 aaKnown RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 NECAP2Q9NVZ3 263 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 COL27A1Q8IZC6 1860 aaPredicted RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 ZFHX2Q9C0A1 2572 aaPredicted RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 KIR2DS5A0A0G2JLQ3 304 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 A0A0G2JNG1 304 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 MED19A0JLT2 244 aaPredicted RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 KIR2DS3K7RE56 304 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 TIAF1O95411 115 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 HLA-HP01893 362 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 CD33P20138 364 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 KIR2DS5Q14953 304 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 NSDHLQ15738 373 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 CSTL1Q9H114 145 aa4.4□□□□□ -1.71
RIF1-203ENST00000428287 ZNF552Q9H707 407 aaPredicted RBP4.4□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A10PA6NDY2 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A18PA6NE21 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A16PA6NEW6 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A20PA6NIJ5 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A8PA6NJQ4 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A7PA6NKC0 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A22PA8MWA6 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A12PA8MX19 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A5PA8MXJ8 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A23PA8MXZ1 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 H0Y980 276 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 H3BMH7 237 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 HNRNPA1P09651 372 aaKnown RBP eCLIP4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A15PP0C7V4 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A13PP0C7W8 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A14PP0C7W9 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM90A24PP0C7X0 464 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 HNRNPA2B1P22626 353 aaKnown RBP4.39□□□□□ -1.71
RIF1-203ENST00000428287 NTSR1P30989 418 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 YPEL5P62699 121 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 HBG1P69891 147 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 HBG2P69892 147 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 OR5D13Q8NGL4 314 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 TOMM40LQ969M1 308 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 THOC3Q96J01 351 aaKnown RBP4.39□□□□□ -1.71
RIF1-203ENST00000428287 DGAT2Q96PD7 388 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 PAM16Q9Y3D7 125 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 TRBV6-6A0A0A6YYG2 114 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM221AA4D161 298 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 FAM24AA6NFZ4 105 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 NDUFS8O00217 210 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 OPN1LWP04000 364 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 GP1BBP13224 206 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 APOBEC3AP31941 199 aaPredicted RBP4.39□□□□□ -1.71
RIF1-203ENST00000428287 ARL16Q0P5N6 197 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 MMDQ15546 238 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 RHBDD2Q6NTF9 364 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.39□□□□□ -1.712e-7■■■■□ 24.8
RIF1-203ENST00000428287 C10orf53Q8N6V4 93 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 ZNF525Q8N782 197 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 ZNF738Q8NE65 137 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 SGMS2Q8NHU3 365 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 HES4Q9HCC6 221 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 GPR27Q9NS67 375 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 ATXN7O15265 892 aaPredicted RBP4.39□□□□□ -1.71
RIF1-203ENST00000428287 CEACAM8P31997 349 aaPredicted RBP4.39□□□□□ -1.71
RIF1-203ENST00000428287 C17orf67Q0P5P2 114 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 LRRC75BQ2VPJ9 315 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 KLHL24Q6TFL4 600 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 TOMM20LQ6UXN7 152 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 Q6ZRM9 215 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 TAF15Q92804 592 aaKnown RBP eCLIP4.39□□□□□ -1.71
RIF1-203ENST00000428287 LHX4Q969G2 390 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 LAMTOR2Q9Y2Q5 125 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 IGHV1-69-2A0A0G2JMI3 117 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 CTXND1A0A1B0GTU2 59 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 C17orf112F2Z3M2 114 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 SIAH2O43255 324 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 BMP5P22003 454 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 GCH1P30793 250 aa4.39□□□□□ -1.71
RIF1-203ENST00000428287 GALR1P47211 349 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms