RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 OR6V1Q8N148 313 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 UBAC2Q8NBM4 344 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 OR6K3Q8NGY3 331 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 OR10G6Q8NH81 332 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 STAG3L4Q8TBR4 150 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 FAM104AQ969W3 186 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PPP1R36Q96LQ0 422 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 S100A13Q99584 98 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 C2orf88Q9BSF0 95 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 BEX2Q9BXY8 128 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 HDHD2Q9H0R4 259 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 OR51E2Q9H255 320 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 GAL3ST2Q9H3Q3 398 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 POMKQ9H5K3 350 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 POPDC3Q9HBV1 291 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 ABCB9Q9NP78 766 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 HEBP1Q9NRV9 189 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 C1orf109Q9NX04 203 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 ZNRD1Q9P1U0 126 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PSG11Q9UQ72 335 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 POFUT2Q9Y2G5 429 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PCYT1BQ9Y5K3 369 aaPredicted RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 SLC22A7Q9Y694 548 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 TMEM14AQ9Y6G1 99 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 AKAP12Q02952 1782 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 C3P01024 1663 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 LMO7Q8WWI1 1683 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SMIM26A0A096LP01 95 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 IGHV1OR15-9A0A0B4J2B8 117 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 IGKV1-8A0A0C4DH67 115 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TRDV1A0A1B0GX56 115 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 A0A1W2PRF3 423 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 A0A1W2PRM7 423 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TMEM223A0PJW6 202 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 RFPL4AA6NLU0 287 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 MCRIP1C9JLW8 97 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 RFPL4AL1F8VTS6 287 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 FXYD1O00168 92 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 NDUFS8O00217 210 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 GPR171O14626 319 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 KDELR3O43731 214 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 ENTPD6O75354 484 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 MED6O75586 246 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 GCM2O75603 506 aaPredicted RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 POP7O75817 140 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 RBBP9O75884 186 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 CDRT1O95170 752 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 GADD45GO95257 159 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 ETHE1O95571 254 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 IL5P05113 134 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 NMBP08949 121 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SLC35E2BP0CK96 405 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SULT1A3P0DMM9 295 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SULT1A4P0DMN0 295 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 GABRA1P14867 456 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 PTNP21246 168 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 HCCSP53701 268 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 ARPP19P56211 112 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SMIM11AP58511 58 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SNRPGP62308 76 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 RPL23P62829 140 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 DCDP81605 110 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 MRPS10P82664 201 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 LOXL1Q08397 574 aaPredicted RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 SLAQ13239 276 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 EIF4EBP2Q13542 120 aaPredicted RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 PTGES3Q15185 160 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 RBMY1FQ15415 496 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 TRAM1Q15629 374 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 RNASE10Q5GAN6 216 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 ZNF678Q5SXM1 525 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 FAHD1Q6P587 224 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 OR2W3Q7Z3T1 314 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 DCXRQ7Z4W1 244 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 DPPA2Q7Z7J5 298 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 NAA40Q86UY6 237 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 LINC00471Q8N535 108 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 OR5T1Q8NG75 326 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 OR13C9Q8NGT0 318 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 OR2T35Q8NGX2 323 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TERB2Q8NHR7 220 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TWIST2Q8WVJ9 160 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 RXFP2Q8WXD0 754 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TMEM203Q969S6 136 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TMED9Q9BVK6 235 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SEC11CQ9BY50 192 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 PRRG3Q9BZD7 231 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 TOLLIPQ9H0E2 274 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 ABCG5Q9H222 651 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 NLE1Q9NVX2 485 aaPredicted RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 CALML5Q9NZT1 146 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 FBXL3Q9UKT7 428 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 SCML1Q9UN30 329 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 FLVCR2Q9UPI3 526 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 CARHSP1Q9Y2V2 147 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 UBIAD1Q9Y5Z9 338 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 MYO5BQ9ULV0 1848 aa2.9□□□□□ -1.95
VPS54-204ENST00000416400 PARP4Q9UKK3 1724 aaKnown RBP2.9□□□□□ -1.95
VPS54-204ENST00000416400 SLIT2O94813 1529 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 A0A096LPI6 279 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms