RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SPIN3Q5JUX0 258 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 ATRAIDQ6UW56 229 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 ZNF818PQ6ZRF7 136 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 FAM219AQ8IW50 185 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 H1FOOQ8IZA3 346 aaPredicted RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 BATF2Q8N1L9 274 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 C1orf162Q8NEQ5 155 aaPredicted RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 DMBX1Q8NFW5 382 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 OR52M1Q8NGK5 317 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 SLC25A31Q9H0C2 315 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 TREM1Q9NP99 234 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 UQCC1Q9NVA1 299 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 F8P00451 2351 aa12.52□□□□□ -0.4
USP4-203ENST00000415188 CELSR1Q9NYQ6 3014 aa12.52□□□□□ -0.4
USP4-203ENST00000415188 MED12LQ86YW9 2145 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 IQCF6A8MYZ5 107 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 SNAPINO95295 136 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 ATF4P18848 351 aaPredicted RBP12.52□□□□□ -0.41
USP4-203ENST00000415188 VDAC1P21796 283 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 CA6P23280 308 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 NKX2-1P43699 371 aaPredicted RBP12.52□□□□□ -0.41
USP4-203ENST00000415188 ACSF3Q4G176 576 aaPredicted RBP12.52□□□□□ -0.41
USP4-203ENST00000415188 Q6P435 159 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 Q6ZT83 130 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 FAM214BQ7L5A3 538 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 GAPTQ8N292 157 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 ERGIC1Q969X5 290 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 USB1Q9BQ65 265 aaKnown RBP12.52□□□□□ -0.41
USP4-203ENST00000415188 HRH4Q9H3N8 390 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 IL36RNQ9UBH0 155 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 OR2W1Q9Y3N9 320 aa12.52□□□□□ -0.41
USP4-203ENST00000415188 IGKV1-6A0A0C4DH72 117 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 F8W036 122 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 LILRA1O75019 489 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 FBXO24O75426 580 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 SPP1P10451 314 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 IGHV1-2P23083 117 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 ERVK11-1P61568 191 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 FIP1L1Q6UN15 594 aaKnown RBP12.51□□□□□ -0.41
USP4-203ENST00000415188 BOLLQ8N9W6 283 aaKnown RBP12.51□□□□□ -0.41
USP4-203ENST00000415188 OR10J5Q8NHC4 309 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 NRIP2Q9BQI9 281 aa12.51□□□□□ -0.41
USP4-203ENST00000415188 IGKV1D-13A0A0B4J2D9 117 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 PITX3O75364 302 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 CD5P06127 495 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 DANCRP0C864 163 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 PGA5P0DJD9 388 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 IGKV1-13P0DP09 117 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 CBR1P16152 277 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 ADCYAP1P18509 176 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 ZNF266Q14584 549 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 HMGN3Q15651 99 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 NMSQ5H8A3 153 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 Q6ZRG5 221 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 OR2C3Q8N628 320 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 CLRN3Q8NCR9 226 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 NRGNQ92686 78 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 WNT2BQ93097 391 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 AKR1E2Q96JD6 320 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 SMIM3Q9BZL3 60 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 PLEKHF2Q9H8W4 249 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 PURGQ9UJV8 347 aaKnown RBP12.5□□□□□ -0.41
USP4-203ENST00000415188 ZDHHC8Q9ULC8 765 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 SPG11Q96JI7 2443 aa12.5□□□□□ -0.41
USP4-203ENST00000415188 ANKRD17O75179 2603 aaKnown RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 AHRRA9YTQ3 701 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 RNASEK-C17orf49H0YIS7 233 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 TRIM77I1YAP6 450 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 ZNF44P15621 663 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 MUC1P15941 1255 aaPredicted RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 COX5AP20674 150 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 BMP5P22003 454 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 CEACAM8P31997 349 aaPredicted RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 DVL1P1P54792 670 aaPredicted RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 UCP2P55851 309 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 EWSR1Q01844 656 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP4-203ENST00000415188 BAXQ07812 192 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 TESK1Q15569 626 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 ZNF497Q6ZNH5 498 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 C1orf174Q8IYL3 243 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 PUSL1Q8N0Z8 303 aaKnown RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 SCCPDHQ8NBX0 429 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 LILRB1Q8NHL6 650 aaPredicted RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 RDH5Q92781 318 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 ZNF488Q96MN9 340 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 ADAT1Q9BUB4 502 aaKnown RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 WFDC1Q9HC57 220 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 OBP2BQ9NPH6 170 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 CCL28Q9NRJ3 127 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 LYRM2Q9NU23 88 aaPredicted RBP12.49□□□□□ -0.41
USP4-203ENST00000415188 HIVEP1P15822 2718 aa12.49□□□□□ -0.41
USP4-203ENST00000415188 HSPB6O14558 160 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 HSD17B6O14756 317 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 HS3ST1O14792 307 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 SH2D1BO14796 132 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 PGLYRP1O75594 196 aaPredicted RBP12.48□□□□□ -0.41
USP4-203ENST00000415188 F2RP25116 425 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 HOXC12P31275 282 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 IDH3GP51553 393 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms