RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HSPB1P04792 205 aaKnown RBP8.35□□□□□ -1.07
SS18-203ENST00000415083 ALKBH6Q3KRA9 238 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 FAM180AQ6UWF9 173 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 WDR5BQ86VZ2 330 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 THNSL2Q86YJ6 484 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 GPR61Q9BZJ8 451 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 OR51I2Q9H344 312 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 PLA2G3Q9NZ20 509 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 FOXJ2Q9P0K8 574 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 OR2W1Q9Y3N9 320 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 WSB1Q9Y6I7 421 aa8.35□□□□□ -1.07
SS18-203ENST00000415083 FAM166BA8MTA8 275 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 C9orf172C9J069 976 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 KALRNO60229 2985 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 WISP2O76076 250 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 TFF1P04155 84 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 CELA3BP08861 270 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 COL8A2P25067 703 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 HOXA6P31267 233 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 GLIPR1P48060 266 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 UBE2KP61086 200 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 RAB1AP62820 205 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 SRPXP78539 464 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 IL22RA2Q969J5 263 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 POM121Q96HA1 1249 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 PRO1933Q9H354 126 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 SMDT1Q9H4I9 107 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 DUXBA0A1W2PPF3 345 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 CXorf65A6NEN9 183 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 GALR2O43603 387 aaPredicted RBP8.34□□□□□ -1.07
SS18-203ENST00000415083 RNF224P0DH78 156 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 IAPPP10997 89 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 MMP9P14780 707 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 CYB561P49447 251 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 BAXQ07812 192 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 SPATA46Q5T0L3 261 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 BEND4Q6ZU67 534 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 FAM86C1Q9NVL1 165 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 LRFN1Q9P244 771 aa8.34□□□□□ -1.07
SS18-203ENST00000415083 TRAV1-1A0A0B4J248 108 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 IGHV3-64DA0A0J9YX35 117 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 CYB5BO43169 146 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 MT-CO3P00414 261 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 TRGC2P03986 189 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 SERPINA7P05543 415 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 WNT2P09544 360 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 S100A2P29034 98 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 ERVS71-1P61550 626 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 HLA-DRB3P79483 266 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 IL24Q13007 206 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 EIF4EBP1Q13541 118 aaPredicted RBP8.33□□□□□ -1.08
SS18-203ENST00000415083 UNQ6494/PRO21346Q6UXR6 183 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 OR5A2Q8NGI9 324 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 USF3Q68DE3 2245 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 METTL15P1P0C7V9 234 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 GPX4P36969 197 aaPredicted RBP8.33□□□□□ -1.08
SS18-203ENST00000415083 LINC00205P59089 165 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 CMTM1Q8IZ96 169 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 FRZBQ92765 325 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 S100PBPQ96BU1 408 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 WDYHV1Q96HA8 205 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 THOC3Q96J01 351 aaKnown RBP8.33□□□□□ -1.08
SS18-203ENST00000415083 SLC25A31Q9H0C2 315 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 CACNG5Q9UF02 275 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 DOCK11Q5JSL3 2073 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 TRAPPC2LH3BP13 241 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 CA6P23280 308 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 CDX1P47902 265 aaPredicted RBP8.33□□□□□ -1.08
SS18-203ENST00000415083 ERVK11-1P61568 191 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 HNF4GQ14541 408 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 OR2T2Q6IF00 324 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 Q6ZR03 302 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 GTF3AQ92664 365 aaKnown RBP8.33□□□□□ -1.08
SS18-203ENST00000415083 APOBEC3DQ96AK3 386 aaPredicted RBP8.33□□□□□ -1.08
SS18-203ENST00000415083 TTTY12Q9BZ98 90 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 PRDM13Q9H4Q3 707 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 DMXL2Q8TDJ6 3036 aa8.33□□□□□ -1.08
SS18-203ENST00000415083 AHCTF1Q8WYP5 2266 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 B4E171 279 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 RAMP3O60896 148 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 P0C879 139 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 COX5BP10606 129 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 TSPAN7P41732 249 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 CEBPDP49716 269 aaPredicted RBP8.32□□□□□ -1.08
SS18-203ENST00000415083 SSPNQ14714 243 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 ZNF497Q6ZNH5 498 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 MRPL21Q7Z2W9 205 aaKnown RBP8.32□□□□□ -1.08
SS18-203ENST00000415083 TMEM251Q8N6I4 163 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 GATAD1Q8WUU5 269 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 RCC1LQ96I51 464 aaKnown RBP8.32□□□□□ -1.08
SS18-203ENST00000415083 GAR1Q9NY12 217 aaKnown RBP8.32□□□□□ -1.08
SS18-203ENST00000415083 GNG13Q9P2W3 67 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 NPIPB11E5RHQ5 1161 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 VAMP2P63027 116 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 DEFA6Q01524 100 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 FAM58AQ8N1B3 248 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 HIST3H2BBQ8N257 126 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 MBD3L1Q8WWY6 194 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 PPP1R3CQ9UQK1 317 aa8.32□□□□□ -1.08
SS18-203ENST00000415083 LOXL2Q9Y4K0 774 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms