RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SEC11BP0C7V7 166 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 CNTFRP26992 372 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 ACVR1Q04771 509 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 FAM78AQ5JUQ0 283 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR5AN1Q8NGI8 311 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 SLC25A40Q8TBP6 338 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 KDM3BQ7LBC6 1761 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 SIGLEC1Q9BZZ2 1709 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 C17orf51A8MQB3 221 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 CTSSP25774 331 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 GALNSP34059 522 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 SLC25A1P53007 311 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 LINC00596Q86U02 117 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR5M9Q8NGP3 310 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 PARLQ9H300 379 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 DPH3P1Q9H4G8 78 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 A0A087WUJ7 227 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR11H12B2RN74 326 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 HOXA3O43365 443 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 TSPAN2O60636 221 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 MPLP40238 635 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 NFAM1Q8NET5 270 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR11H1Q8NG94 326 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR11H2Q8NH07 326 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 LHFPL5Q8TAF8 219 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 KLK15Q9H2R5 256 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 KRTCAP3Q53RY4 240 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 TMEM179BQ7Z7N9 219 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR1L8Q8NGR8 309 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 LINC01553A4QN01 128 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 ALG1L2C9J202 215 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF600Q6ZNG1 722 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 OR2Y1Q8NGV0 311 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 TSPAN32Q96QS1 320 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 MARVELD1Q9BSK0 173 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 INSIG2Q9Y5U4 225 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 DIRC2Q96SL1 478 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 NRIP2Q9BQI9 281 aa11.77□□□□□ -0.52
CCDC88A-204ENST00000413716 WDFY2Q96P53 400 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 TMEM160Q9NX00 188 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 LAMB2P55268 1798 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 A0A1W2PR48 441 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 CXCL13O43927 109 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF770Q6IQ21 691 aaPredicted RBP11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 C5P01031 1676 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 TRAV8-4A0A0B4J246 113 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 HYPMO75409 117 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 IGHV3-13P01766 116 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 IGHV3-7P01780 117 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 NUBP1P53384 320 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 PRSS12P56730 875 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 TSPO2Q5TGU0 170 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 CCDC144NLQ6NUI1 221 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 EDA2RQ9HAV5 297 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 UPK1AO00322 258 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 TRGC1P0CF51 173 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 MRPS11P82912 194 aaKnown RBP11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 PSG9Q00887 426 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 TMEM177Q53S58 311 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 C15orf39Q6ZRI6 1047 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 SLC37A2Q8TED4 501 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 SERF2P84101 59 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF345Q14585 488 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 ZFAND6Q6FIF0 208 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 OVCH2Q7RTZ1 564 aa11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.77□□□□□ -0.53
CCDC88A-204ENST00000413716 ANOS1P23352 680 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 LOXL3P58215 753 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 MS4A3Q96HJ5 214 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 TMEM170BQ5T4T1 132 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 OTPQ5XKR4 325 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 SCD5Q86SK9 330 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 KIR3DL3Q8N743 410 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 SLC25A2Q9BXI2 301 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 CBLN4Q9NTU7 201 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 CXorf65A6NEN9 183 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 RGP1Q92546 391 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 FOXB1Q99853 325 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 MC5RP33032 325 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 Q6ZSR9 355 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF707Q96C28 371 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 IGHV3OR16-12A0A075B7B8 117 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 CD27P26842 260 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 TMEM45BQ96B21 275 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 DMRT1Q9Y5R6 373 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 PSMB11A5LHX3 300 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 TMIGD3P0DMS9 266 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 VDAC1P21796 283 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 C4orf45Q96LM5 186 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 CITED1Q99966 193 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 SOSTQ9BQB4 213 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 GLRX2Q9NS18 164 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 EPPINO95925 133 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 TSPOP30536 169 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 MMP16P51512 607 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 RAX2Q96IS3 184 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 RCC2Q9P258 522 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 MTCH2Q9Y6C9 303 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 BTAF1O14981 1849 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 TRAV12-3A0A0B4J271 114 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms