RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NAA60Q9H7X0 242 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 IFT22Q9H7X7 185 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 POLDIP2Q9Y2S7 368 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 PDZD2O15018 2839 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 ANKRD17O75179 2603 aaKnown RBP11.21□□□□□ -0.62
LIMS1-204ENST00000409441 TRBV6-6A0A0A6YYG2 114 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 KIR2DS1A0A191URI9 304 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 POM121CA8CG34 1229 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 C3orf80F5H4A9 247 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 ZNF205O95201 554 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 SPDEFO95238 335 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 IFNA21P01568 189 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 ACAA1P09110 424 aaPredicted RBP11.2□□□□□ -0.62
LIMS1-204ENST00000409441 FCGR2CP31995 323 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 NUP62P37198 522 aaPredicted RBP11.2□□□□□ -0.62
LIMS1-204ENST00000409441 KIR2DS4P43632 304 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PDLIM4P50479 330 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PIGPP57054 158 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 HOXA4Q00056 320 aaPredicted RBP11.2□□□□□ -0.62
LIMS1-204ENST00000409441 NOTCH2Q04721 2471 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 IL15RAQ13261 267 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 KIR2DS1Q14954 304 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 AANATQ16613 207 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 ABCA11PQ4W5N1 156 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 TOR2AQ5JU69 321 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 FAM201AQ5SY85 155 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 BRICD5Q6PL45 260 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PDZD9Q8IXQ8 264 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 FAM185AQ8N0U4 392 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 C1orf87Q8N0U7 546 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 GCSAMQ8N6F7 178 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 LRTM2Q8N967 370 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 ZNF488Q96MN9 340 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 RSRP1Q9BUV0 290 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 RNF126Q9BV68 326 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 Q9N2K0 584 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 DNAJB11Q9UBS4 358 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PFDN2Q9UHV9 154 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PPIHO43447 177 aaKnown RBP11.2□□□□□ -0.62
LIMS1-204ENST00000409441 RLN2P04090 185 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 CTXN2P0C2S0 81 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PGA5P0DJD9 388 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PRKACAP17612 351 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 RBM39Q14498 530 aaKnown RBP11.2□□□□□ -0.62
LIMS1-204ENST00000409441 ATXN7L3Q14CW9 347 aaPredicted RBP11.2□□□□□ -0.62
LIMS1-204ENST00000409441 PDCD1Q15116 288 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 Q8IYB0 196 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 FAM58AQ8N1B3 248 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 BATF2Q8N1L9 274 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 FAM168AQ92567 244 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 TOMM40LQ969M1 308 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 OR10C1Q96KK4 312 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 NRIP2Q9BQI9 281 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 WDR13Q9H1Z4 485 aa11.2□□□□□ -0.62
LIMS1-204ENST00000409441 DYSFO75923 2080 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 CHD3Q12873 2000 aaKnown RBP11.19□□□□□ -0.62
LIMS1-204ENST00000409441 PPIAL4EA0A075B759 164 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 PPIAL4DF5H284 164 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 F8VVB4 439 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 F8VWA3 439 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 WNT9BO14905 357 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 SHOXO15266 292 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 DIRAS3O95661 229 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 HOXB5P09067 269 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 PPIAL4FP0DN26 164 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 EGR1P18146 543 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 DSCR9P59020 149 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 ERVK11-1P61568 191 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 CLEC12BQ2HXU8 276 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 CLEC2AQ6UVW9 174 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 Q6ZPA2 131 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 STOML3Q8TAV4 291 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 PCNPQ8WW12 178 aaKnown RBP11.19□□□□□ -0.62
LIMS1-204ENST00000409441 RTN4IP1Q8WWV3 396 aaPredicted RBP11.19□□□□□ -0.62
LIMS1-204ENST00000409441 RAB1CQ92928 201 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 TIMD4Q96H15 378 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 AQP10Q96PS8 301 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 FOXC2Q99958 501 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 ZNF471Q9BX82 626 aaPredicted RBP11.19□□□□□ -0.62
LIMS1-204ENST00000409441 RASL12Q9NYN1 266 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 PRR13Q9NZ81 148 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 PPIAL4AQ9Y536 164 aa11.19□□□□□ -0.62
LIMS1-204ENST00000409441 SRRM5B3KS81 715 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 H0YIZ8 118 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.18□□□□□ -0.62
LIMS1-204ENST00000409441 I3L521 148 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 PPYP01298 95 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 AADACP22760 399 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 LUMP51884 338 aaPredicted RBP11.18□□□□□ -0.62
LIMS1-204ENST00000409441 FXYD4P59646 89 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 TMEM187Q14656 261 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 PRSS57Q6UWY2 283 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 CCDC28AQ8IWP9 274 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 DEFB108BQ8NET1 73 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 C10orf105Q8TEF2 133 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 RBPMSQ93062 196 aaKnown RBP11.18□□□□□ -0.62
LIMS1-204ENST00000409441 SLC2A9Q9NRM0 540 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 SESN1Q9Y6P5 492 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 CSMD2Q7Z408 3487 aa11.18□□□□□ -0.62
LIMS1-204ENST00000409441 IGHV3OR15-7A0A075B7D8 119 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms