RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ADGRL4Q9HBW9 690 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 LINC00862A6NCI5 91 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 GNG7O60262 68 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 POLR2GP62487 172 aaKnown RBP eCLIP6.36□□□□□ -1.39
SCN9A-202ENST00000409435 YBX1P67809 324 aaKnown RBP6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SSBP1Q04837 148 aaKnown RBP6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRR30Q53SZ7 412 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF511Q8NB15 262 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 OR6X1Q8NH79 312 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SLC25A33Q9BSK2 321 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 FUT9Q9Y231 359 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 KCNK7Q9Y2U2 307 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 TET1Q8NFU7 2136 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 BRCA1P38398 1863 aaKnown RBP6.36□□□□□ -1.39
SCN9A-202ENST00000409435 A0A0J9YW62 118 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 FAM74A7A6NL05 159 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 CYR61O00622 381 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 LIPFP07098 398 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PATE4P0C8F1 98 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 NMUP48645 174 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRDX4Q13162 271 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF506Q5JVG8 444 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SLC25A34Q6PIV7 304 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 LYG1Q8N1E2 194 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF426Q9BUY5 554 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRSS22Q9GZN4 317 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 CA10Q9NS85 328 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 TMEM229AB2RXF0 380 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 COX7A2P2O60397 106 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 TIMP3P35625 211 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 DGCR2P98153 550 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 SOWAHCQ53LP3 525 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 MRM1Q6IN84 353 aaKnown RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 TBPL2Q6SJ96 375 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 Q6ZT83 130 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 OR1L6Q8NGR2 347 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 NUDCD2Q8WVJ2 157 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 NAA60Q9H7X0 242 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 GPR84Q9NQS5 396 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 OPN4Q9UHM6 478 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 HILPDAQ9Y5L2 63 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 A0A1B0GW15 77 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 LOC390937A0A1W2PQ73 354 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 MFSD2BA6NFX1 497 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 KCNAB3O43448 404 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ALOX5APP20292 161 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 CKS1BP61024 79 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 CD226Q15762 336 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 TFAP2EQ6VUC0 442 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 UBE2DNLQ8IWF7 75 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 DNAJC4Q9NNZ3 241 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 MYO10Q9HD67 2058 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 DHRS7CA6NNS2 312 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 SPINK4O60575 86 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 PCSK4Q6UW60 755 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 CLEC18BQ6UXF7 455 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 OR1K1Q8NGR3 316 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 RTN4IP1Q8WWV3 396 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 R3HDM4Q96D70 268 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 OR2V2Q96R30 315 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ASCL3Q9NQ33 180 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ASIC5Q9NY37 505 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 C7orf77A4D0Y5 90 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 LIPT2A6NK58 231 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF121P58317 390 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 EIF4EBP2Q13542 120 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 MRPL14Q6P1L8 145 aaKnown RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 MYOZ3Q8TDC0 251 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 PRR14Q9BWN1 585 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ZNHIT1O43257 154 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 UMODP07911 640 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 TSPO2Q5TGU0 170 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF843Q8N446 348 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ISOC2Q96AB3 205 aa6.35□□□□□ -1.39
SCN9A-202ENST00000409435 ELF5Q9UKW6 265 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 RCL1Q9Y2P8 373 aaKnown RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 MRPS16Q9Y3D3 137 aaKnown RBP6.35□□□□□ -1.39
SCN9A-202ENST00000409435 IGHV3OR15-7A0A075B7D8 119 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 DHRS3O75911 302 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RPS4Y1P22090 263 aaKnown RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 FAM3BP58499 235 aaPredicted RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 CTF1Q16619 201 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RNFT1Q5M7Z0 435 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 Q6ZPB1 254 aaPredicted RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 OR52I1Q8NGK6 324 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 MRPL37Q9BZE1 423 aaKnown RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 SLC17A5Q9NRA2 495 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 J3KTA2 159 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 IL4P05112 153 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RPL31P62899 125 aaKnown RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 PLPPR5Q32ZL2 321 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 GLDNQ6ZMI3 551 aaPredicted RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 ITLN1Q8WWA0 313 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 COX11Q9Y6N1 276 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 ABCA7Q8IZY2 2146 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RBBP6Q7Z6E9 1792 aaKnown RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 MYO5AQ9Y4I1 1855 aaKnown RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 MUC6Q6W4X9 2439 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 A0A1B0GWB2 263 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 CXorf65A6NEN9 183 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms