RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 HIST1H3AP68431 136 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 H3F3AP84243 136 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 PSG4Q00888 419 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 EMX2Q04743 252 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 REG3AQ06141 175 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CD47Q08722 323 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 EGFEM1PQ0D2K5 195 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 IHHQ14623 411 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 NSDHLQ15738 373 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 FAM162BQ5T6X4 162 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 HENMT1Q5T8I9 393 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM236Q5W0B7 351 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TOMM20LQ6UXN7 152 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 HIST2H3AQ71DI3 136 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF589Q86UQ0 364 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 UBALD2Q8IYN6 164 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 MUC15Q8N387 334 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR11H7Q8NGC8 314 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR1L8Q8NGR8 309 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR4X1Q8NH49 305 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SPPL2BQ8TCT7 592 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CYGBQ8WWM9 190 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 LRRC58Q96CX6 371 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 FMC1Q96HJ9 113 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SIGLEC12Q96PQ1 595 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 EMC6Q9BV81 110 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RSPO3Q9BXY4 272 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SLC25A39Q9BZJ4 359 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 JPT2Q9H910 190 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 EDA2RQ9HAV5 297 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SDF2L1Q9HCN8 221 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 NIT2Q9NQR4 276 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CCL28Q9NRJ3 127 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 BRWD3Q6RI45 1802 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PTPN23Q9H3S7 1636 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 A0A087WWV3 80 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TRAV8-2A0A0B4J237 113 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 A0A0J9YXV3 536 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 EXOC1LA0A1B0GW35 172 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PMS2P5A8MQ11 134 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 GALR3O60755 368 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-204ENST00000399489 ZFAND5O76080 213 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 OR56A5P0C7T3 313 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 ESDP10768 282 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PSMB1P20618 241 aaKnown RBP3.09□□□□□ -1.91
HMGB1-204ENST00000399489 CD34P28906 385 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 GZMMP51124 257 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TAS2R19P59542 299 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 IFITM2Q01629 132 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PMVKQ15126 192 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PRR4Q16378 134 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM78Q5T7P6 136 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TSPO2Q5TGU0 170 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 DCUN1D2Q6PH85 259 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PLET1Q6UQ28 207 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 CLEC19AQ6UXS0 136 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 SMIM29Q86T20 159 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 DOLPP1Q86YN1 238 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM61Q8N0U2 210 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 OR2G3Q8NGZ4 309 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 OR4S2Q8NH73 311 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 OR10D3Q8NH80 312 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM190Q8WZ59 177 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TM4SF18Q96CE8 201 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF689Q96CS4 500 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-204ENST00000399489 CAPZA3Q96KX2 299 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 PPP3R2Q96LZ3 170 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 OR2M4Q96R27 311 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 ABCG5Q9H222 651 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 VCXQ9H320 206 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 HEBP1Q9NRV9 189 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 GLS2Q9UI32 602 aa3.09□□□□□ -1.91
HMGB1-204ENST00000399489 TDRD15B5MCY1 1934 aaKnown RBP3.09□□□□□ -1.91
HMGB1-204ENST00000399489 DAPK1P53355 1430 aa3.09□□□□□ -1.92
HMGB1-204ENST00000399489 USP32Q8NFA0 1604 aa3.09□□□□□ -1.92
HMGB1-204ENST00000399489 GCC2Q8IWJ2 1684 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 MAP1LC3B2A6NCE7 125 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 OR4C46A6NHA9 309 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 C8orf87E5RJ46 101 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 I3L4J1 428 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 K7ERU9 68 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 CHST10O43529 356 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 NDUFS5O43920 106 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 TBL1XO60907 577 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 PDCD6O75340 191 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 LYPLA1O75608 230 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 DUS4LO95620 317 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 IGF2P01344 180 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 CRYGDP07320 174 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 SPNP16150 400 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF708P17019 499 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 MIPP30301 263 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 HSPA9P38646 679 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 WNT4P56705 351 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 TAS2R46P59540 309 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 RPS20P60866 119 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 RRAS2P62070 204 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 BIKQ13323 160 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 LY6DQ14210 128 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 HERPUD1Q15011 391 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms