RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RBM39Q14498 530 aaKnown RBP8.52□□□□□ -1.05
VPS53-202ENST00000389040 IL13RA2Q14627 380 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 IGSF11Q5DX21 431 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 PRSS54Q6PEW0 395 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 FAM58AQ8N1B3 248 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 OR10Z1Q8NGY1 313 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 RTN4IP1Q8WWV3 396 aaPredicted RBP8.52□□□□□ -1.05
VPS53-202ENST00000389040 RNF126Q9BV68 326 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 RHOFQ9HBH0 211 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 SLC2A9Q9NRM0 540 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 H0YIZ8 118 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 TMEM178BH3BS89 294 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 HSPB6O14558 160 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 KCNAB3O43448 404 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 NDUFA2O43678 99 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 RHBDL1O75783 438 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 HEXAP06865 529 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 PET100P0DJ07 73 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 LYL1P12980 280 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 AADACP22760 399 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 LUMP51884 338 aaPredicted RBP8.51□□□□□ -1.05
VPS53-202ENST00000389040 LOXL1Q08397 574 aaPredicted RBP8.51□□□□□ -1.05
VPS53-202ENST00000389040 TOR2AQ5JU69 321 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 SUMF2Q8NBJ7 301 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 NEK7Q8TDX7 302 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 GALNT14Q96FL9 552 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 Q96MF0 132 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 ARPC5LQ9BPX5 153 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 RSRP1Q9BUV0 290 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 ZNF471Q9BX82 626 aaPredicted RBP8.51□□□□□ -1.05
VPS53-202ENST00000389040 RIMS4Q9H426 269 aaPredicted RBP8.51□□□□□ -1.05
VPS53-202ENST00000389040 RNF7Q9UBF6 113 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 POLDIP2Q9Y2S7 368 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 KCNIP3Q9Y2W7 256 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 AKAP6Q13023 2319 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 ARFGEF3Q5TH69 2177 aa8.51□□□□□ -1.05
VPS53-202ENST00000389040 KIR2DS1A0A191URI9 304 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 hCG_1807616A0A1W2PRN6 198 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 LHBP01229 141 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 PPYP01298 95 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 IFNA21P01568 189 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 TK1P04183 234 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 KIR2DS4P43632 304 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 GPR6P46095 362 aaPredicted RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 P2RX3P56373 397 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 ZNF154Q13106 437 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 IL15RAQ13261 267 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 RAB32Q13637 225 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 TMEM187Q14656 261 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 KIR2DS1Q14954 304 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 AANATQ16613 207 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 IAH1Q2TAA2 248 aaPredicted RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 TMEM155Q4W5P6 130 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 PHLDA2Q53GA4 152 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 THOC7Q6I9Y2 204 aaKnown RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 WDR86Q86TI4 376 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 OR5T2Q8NGG2 359 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 RRNAD1Q96FB5 475 aaKnown RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 CXorf58Q96LI9 332 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 SUCNR1Q9BXA5 334 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 REG4Q9BYZ8 158 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 SLC25A32Q9H2D1 315 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 IFT22Q9H7X7 185 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 MED9Q9NWA0 146 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 RASL12Q9NYN1 266 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 GSKIPQ9P0R6 139 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 TRAV24A0A0B4J272 114 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 TRDCB7Z8K6 153 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 F5H0A9 414 aaPredicted RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 I3L521 148 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 PPIHO43447 177 aaKnown RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 LY6HO94772 140 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 GLAP06280 429 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 GRPP07492 148 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 OR5AC1P0C628 307 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 MUC1P15941 1255 aaPredicted RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 USF1P22415 310 aaPredicted RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 NUP62P37198 522 aaPredicted RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 S100A10P60903 97 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 MOGAT3Q86VF5 341 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 FAM90A1Q86YD7 464 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 PDZD9Q8IXQ8 264 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 Q8IYB0 196 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 CCDC71LQ8N9Z2 235 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 SCCPDHQ8NBX0 429 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 WFDC11Q8NEX6 87 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 ANGPTL6Q8NI99 470 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 MRPL30Q8TCC3 161 aaKnown RBP8.5□□□□□ -1.05
VPS53-202ENST00000389040 PHYHIPLQ96FC7 376 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 OR5AC2Q9NZP5 309 aa8.5□□□□□ -1.05
VPS53-202ENST00000389040 USF3Q68DE3 2245 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 IGHV4-30-2A0A087WSY4 118 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 TRBV6-6A0A0A6YYG2 114 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 TRAV38-1A0A0B4J264 116 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 A6NLC8 198 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 CYSRT1A8MQ03 144 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 BET1O15155 118 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 DIRAS3O95661 229 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 SCTP09683 121 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 CTXN2P0C2S0 81 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms