RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ZNF845Q96IR2 970 aaPredicted RBP18.02■□□□□ 0.47
UPF3A-202ENST00000375299 NOL4LQ96MY1 436 aaPredicted RBP18.02■□□□□ 0.47
UPF3A-202ENST00000375299 WDR54Q9H977 334 aa18.02■□□□□ 0.47
UPF3A-202ENST00000375299 CRIM1Q9NZV1 1036 aa18.02■□□□□ 0.47
UPF3A-202ENST00000375299 A8MWP6 167 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 CXCL13O43927 109 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 ZNF737O75373 536 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 COX6A1P12074 109 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 EPHA8P29322 1005 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-202ENST00000375299 HBG1P69891 147 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 HBG2P69892 147 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 COA6Q5JTJ3 125 aaKnown RBP18.01■□□□□ 0.47
UPF3A-202ENST00000375299 FAM180AQ6UWF9 173 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 COLCA1Q6ZS62 124 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 TGIF2LYQ8IUE0 185 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 LSM10Q969L4 123 aaKnown RBP18.01■□□□□ 0.47
UPF3A-202ENST00000375299 RAB24Q969Q5 203 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 CLDN23Q96B33 292 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 RIMS4Q9H426 269 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-202ENST00000375299 TRAPPC2LH3BP13 241 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 WNT2P09544 360 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 CEACAM6P40199 344 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 PMS2P11Q13670 270 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 SSX2Q16385 188 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 KCNE4Q8WWG9 221 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 DUSP23Q9BVJ7 150 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 WDR61Q9GZS3 305 aaKnown RBP18.01■□□□□ 0.47
UPF3A-202ENST00000375299 PRSS50Q9UI38 385 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 LAMP3Q9UQV4 416 aa18.01■□□□□ 0.47
UPF3A-202ENST00000375299 CD300LBA8K4G0 201 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 IGKV1-39P01597 117 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 IGKV1D-39P04432 117 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 ELLP55199 621 aaPredicted RBP18■□□□□ 0.47
UPF3A-202ENST00000375299 TMEM241Q24JQ0 296 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 C20orf204Q6ZNR8 217 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 ZNF664Q8N3J9 261 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 OR10J5Q8NHC4 309 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 HIST1H2AAQ96QV6 131 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 PARD6GQ9BYG4 376 aaPredicted RBP18■□□□□ 0.47
UPF3A-202ENST00000375299 OCIAD1Q9NX40 245 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 CNTRLQ7Z7A1 2325 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 CACNA1EQ15878 2313 aa18■□□□□ 0.47
UPF3A-202ENST00000375299 KBTBD11O94819 623 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 SRD5A2P31213 254 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 BEND4Q6ZU67 534 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 ZDHHC23Q8IYP9 409 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 NECAP1Q8NC96 275 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 REPIN1Q9BWE0 567 aaKnown RBP17.99■□□□□ 0.47
UPF3A-202ENST00000375299 ERRFI1Q9UJM3 462 aaPredicted RBP17.99■□□□□ 0.47
UPF3A-202ENST00000375299 TP53TG5Q9Y2B4 290 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 XKRY2A2RUG3 117 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 UMODP07911 640 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 CXCL12P48061 93 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 BSXQ3C1V8 233 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 CEACAM21Q3KPI0 293 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 MKXQ8IYA7 352 aa17.99■□□□□ 0.47
UPF3A-202ENST00000375299 NCKAP5O14513 1909 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 TRBV6-6A0A0A6YYG2 114 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 GZMHP20718 246 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 TUBG1P23258 451 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 GALR1P47211 349 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 ERVS71-1P61550 626 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 MEF2BQ02080 365 aaPredicted RBP17.98■□□□□ 0.47
UPF3A-202ENST00000375299 OR51G1Q8NGK1 321 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 LHX4Q969G2 390 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 NDUFAF3Q9BU61 184 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 RPL23P62829 140 aaKnown RBP17.98■□□□□ 0.47
UPF3A-202ENST00000375299 RPS19BP1Q86WX3 136 aaKnown RBP17.98■□□□□ 0.47
UPF3A-202ENST00000375299 OR5B12Q96R08 314 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 OR4C12Q96R67 309 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 SLC39A9Q9NUM3 307 aa17.98■□□□□ 0.47
UPF3A-202ENST00000375299 TNRC6AQ8NDV7 1962 aaKnown RBP17.98■□□□□ 0.47
UPF3A-202ENST00000375299 PPP5D1E7EU14 171 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 H7BYZ3 331 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 GCGP01275 180 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 IGKV1-5P01602 117 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 P2RY6Q15077 328 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 KIAA2026Q5HYC2 2103 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 CENPVQ7Z7K6 275 aaPredicted RBP17.97■□□□□ 0.47
UPF3A-202ENST00000375299 OR10V1Q8NGI7 309 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 ACY3Q96HD9 319 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 SDK2Q58EX2 2172 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 LRP5LA4QPB2 252 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 ZNF66Q6ZN08 573 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 OR10D3Q8NH80 312 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 PSMF1Q92530 271 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 TAF15Q92804 592 aaKnown RBP eCLIP17.97■□□□□ 0.47
UPF3A-202ENST00000375299 ADGRG7Q96K78 797 aa17.97■□□□□ 0.47
UPF3A-202ENST00000375299 A0A0G2JMM0 328 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 A0A1W2PPB8 328 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 A0A1W2PRS3 328 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 KIR3DP1A8MWS1 328 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 SYNGR1O43759 233 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 CCNOP22674 350 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 PDLIM4P50479 330 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 MLF1P58340 268 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 ZNF124Q15973 351 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 LINC00596Q86U02 117 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 BEND2Q8NDZ0 799 aa17.96■□□□□ 0.47
UPF3A-202ENST00000375299 SAP25Q8TEE9 199 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms