RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CCL13Q99616 98 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 SUCNR1Q9BXA5 334 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 EGLN1Q9GZT9 426 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 METTL8Q9H825 291 aaKnown RBP11.47□□□□□ -0.57
PTPRF-202ENST00000372405 TMEM178BH3BS89 294 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 TNFSF12O43508 249 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 CLDN14O95500 239 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 IRF2P14316 349 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 MUC1P15941 1255 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-202ENST00000372405 P2RX3P56373 397 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 CR1LQ2VPA4 569 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 C6orf183Q5T699 404 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 GGNBP1Q5YKI7 109 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 C11orf87Q6NUJ2 197 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 LYZL2Q7Z4W2 148 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 MUC15Q8N387 334 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 FGFRL1Q8N441 504 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 FAM216BQ8N7L0 139 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 BVESQ8NE79 360 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 RFESDQ8TAC1 157 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 C18orf12Q96KH6 178 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 TOLLIPQ9H0E2 274 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 DNTTIP1Q9H147 329 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 MS4A5Q9H3V2 200 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 TSC22D2O75157 780 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 PGLYRP1O75594 196 aaPredicted RBP11.46□□□□□ -0.58
PTPRF-202ENST00000372405 FCN3O75636 299 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 MPC2O95563 127 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 OR8U9P0C7N5 309 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 IL2RGP31785 369 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 LUMP51884 338 aaPredicted RBP11.46□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF808Q8N4W9 903 aaPredicted RBP11.46□□□□□ -0.58
PTPRF-202ENST00000372405 OR8U1Q8NH10 309 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 PPP1R35Q8TAP8 253 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 CCL17Q92583 94 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 ARL11Q969Q4 196 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 C2orf50Q96LR7 162 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 TMEM222Q9H0R3 208 aa11.46□□□□□ -0.58
PTPRF-202ENST00000372405 LRRC30A6NM36 301 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 H0YIZ8 118 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 SLC25A4P12235 298 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 PPP1CCP36873 323 aaKnown RBP11.45□□□□□ -0.58
PTPRF-202ENST00000372405 FGL1Q08830 312 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 TMEM106BQ9NUM4 274 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 COMMD9Q9P000 198 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 FBXO9Q9UK97 447 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-202ENST00000372405 IGHV3-43A0A0B4J1X8 118 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 L7N2F9 121 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 LGALS8O00214 317 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 SIGLEC5O15389 551 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 CGB3P0DN86 165 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 CGB7P0DN87 165 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 IGHV3-43DP0DP04 118 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 PSMB6P28072 239 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 EDDM3BP56851 147 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 TMEM65Q6PI78 240 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 MEX3BQ6ZN04 569 aaKnown RBP11.45□□□□□ -0.58
PTPRF-202ENST00000372405 TCF23Q7RTU1 214 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 CMTM1Q8IZ96 169 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 C5orf30Q96GV9 206 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 RNF126Q9BV68 326 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF665Q9H7R5 613 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 MBD2Q9UBB5 411 aa11.45□□□□□ -0.58
PTPRF-202ENST00000372405 USF3Q68DE3 2245 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 C19orf84I3L1E1 186 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 TNFRSF13BO14836 293 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-202ENST00000372405 RPA2P15927 270 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 AGAP20933 346 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 CYCSP99999 105 aaKnown RBP11.44□□□□□ -0.58
PTPRF-202ENST00000372405 IAH1Q2TAA2 248 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-202ENST00000372405 TRAT1Q6PIZ9 186 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF546Q86UE3 836 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 LGI3Q8N145 548 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 SLC35G3Q8N808 338 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 TMEM56Q96MV1 263 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 OR2S2Q9NQN1 319 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 TNFSF18Q9UNG2 199 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 TMEM56-RWDD3S4R434 201 aa11.44□□□□□ -0.58
PTPRF-202ENST00000372405 A0A1W2PPR1 153 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 RNF222A6NCQ9 220 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 KCNAB3O43448 404 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 F2RP25116 425 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 UCP1P25874 307 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 HTD2P86397 168 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 RAB32Q13637 225 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 OPCMLQ14982 345 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 UTF1Q5T230 341 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 TMEM268Q5VZI3 342 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 TMUB2Q71RG4 321 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 DRAM1Q8N682 238 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 OR5D13Q8NGL4 314 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 C14orf79Q96F83 325 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 CNTNAP3BQ96NU0 1288 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 CNTNAP3Q9BZ76 1288 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 MFFQ9GZY8 342 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 FAM234AQ9H0X4 552 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 NCOR1P1Q9H4R4 102 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 GSKIPQ9P0R6 139 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 FLNCQ14315 2725 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 PPIAL4EA0A075B759 164 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms