RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 JKAMPQ9P055 326 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 A0A1W2PRD5 423 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 A0A1W2PRF3 423 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 A0A1W2PRM7 423 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 FAM157AC9JC47 383 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 ZNF253O75346 499 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 HERVK_113P61574 105 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 SSBP1Q04837 148 aaKnown RBP7.6□□□□□ -1.19
SYNE1-206ENST00000367253 IGFBP7Q16270 282 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 ZNF260Q3ZCT1 412 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 SPINK14Q6IE38 97 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 HAPLN4Q86UW8 402 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 GPR32P1Q8NGA4 272 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 CLUHP3Q96NS8 147 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 CDCA4Q9BXL8 241 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 GABARAPL1Q9H0R8 117 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 C19orf53Q9UNZ5 99 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-206ENST00000367253 WIPI2Q9Y4P8 454 aa7.6□□□□□ -1.19
SYNE1-206ENST00000367253 A0A1W2PRS3 328 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 E9PLN8 166 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 CTDSPLO15194 276 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 PRSS1P07477 247 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 APOBEC3AP31941 199 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-206ENST00000367253 HLA-DRB3P79483 266 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 GAGE5Q13069 117 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 GAGE6Q13070 117 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 OR2T10Q8NGZ9 312 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 GALMQ96C23 342 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 VKORC1Q9BQB6 163 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 C7orf69Q9H7B7 122 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 SLC25A19Q9HC21 320 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 EMCNQ9ULC0 261 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 ZDHHC8Q9ULC8 765 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 OR51B2Q9Y5P1 312 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 F11RQ9Y624 299 aaKnown RBP7.59□□□□□ -1.19
SYNE1-206ENST00000367253 AUP1Q9Y679 476 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 TRAV26-1A0A087WT03 109 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 A0A1W2PNR3 127 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 SIRPB1O00241 398 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 CRYBA4P53673 196 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 RAC3P60763 192 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 TRMT12Q53H54 448 aaKnown RBP7.59□□□□□ -1.19
SYNE1-206ENST00000367253 OCIAD2Q56VL3 154 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 CALHM3Q86XJ0 350 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 EGLN2Q96KS0 407 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 NIPSNAP1Q9BPW8 284 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 SF3B5Q9BWJ5 86 aaKnown RBP7.59□□□□□ -1.19
SYNE1-206ENST00000367253 MAP1LC3CQ9BXW4 147 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 TMEM160Q9NX00 188 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 SELENOKQ9Y6D0 94 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 OR2W5A6NFC9 320 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 HLA-GP17693 338 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 S100A7L2Q5SY68 101 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 OR2L13Q8N349 312 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 CLDN23Q96B33 292 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 VN1R1Q9GZP7 353 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 MIXL1Q9H2W2 232 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 RNF167Q9H6Y7 350 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 ZFP30Q9Y2G7 519 aa7.59□□□□□ -1.19
SYNE1-206ENST00000367253 INTS1Q8N201 2190 aaKnown RBP7.59□□□□□ -1.19
SYNE1-206ENST00000367253 PSMB11A5LHX3 300 aa7.59□□□□□ -1.2
SYNE1-206ENST00000367253 OR5AC1P0C628 307 aa7.59□□□□□ -1.2
SYNE1-206ENST00000367253 IAPPP10997 89 aa7.59□□□□□ -1.2
SYNE1-206ENST00000367253 PTHLHP12272 177 aa7.59□□□□□ -1.2
SYNE1-206ENST00000367253 ADAT3Q96EY9 351 aaPredicted RBP7.59□□□□□ -1.2
SYNE1-206ENST00000367253 GPR137Q96N19 417 aa7.59□□□□□ -1.2
SYNE1-206ENST00000367253 RETNQ9HD89 108 aa7.59□□□□□ -1.2
SYNE1-206ENST00000367253 F5H697 171 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 HPRT1P00492 218 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 F12P00748 615 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-206ENST00000367253 KRASP01116 189 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 CD3DP04234 171 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 ODF1Q14990 250 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 HLA-DRB5Q30154 266 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 ACSM6Q6P461 480 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 FAM214BQ7L5A3 538 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 PUSL1Q8N0Z8 303 aaKnown RBP7.58□□□□□ -1.2
SYNE1-206ENST00000367253 TMEM116Q8NCL8 245 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 HSPB9Q9BQS6 159 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 TECRQ9NZ01 308 aaKnown RBP7.58□□□□□ -1.2
SYNE1-206ENST00000367253 A0A1W2PP11 408 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 M0R082 166 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 TMPRSS2O15393 492 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 NPSP0C0P6 89 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 SOWAHCQ53LP3 525 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-206ENST00000367253 VGLL1Q99990 258 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 BANF2Q9H503 90 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 ST6GALNAC2Q9UJ37 374 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 CHST2Q9Y4C5 530 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 BRCA1P38398 1863 aaKnown RBP7.58□□□□□ -1.2
SYNE1-206ENST00000367253 TRAV8-2A0A0B4J237 113 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 SNAI2O43623 268 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 SOD1P00441 154 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 TSPOP30536 169 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 LRRC75BQ2VPJ9 315 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 Q71RC1 249 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-206ENST00000367253 OR1L4Q8NGR5 311 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 SAP25Q8TEE9 199 aa7.58□□□□□ -1.2
SYNE1-206ENST00000367253 SMIM4Q8WVI0 70 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms