RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 EP300Q09472 2414 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 C1QTNF9BB2RNN3 333 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 PSPNO60542 156 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 DEFB109BQ30KR1 87 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 ZNF826PQ6ZT77 177 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 PLSCR4Q9NRQ2 329 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 RBM7Q9Y580 266 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 KPTNQ9Y664 436 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 H7C2Y5 167 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 WNT9BO14905 357 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 CXorf67Q86X51 503 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 ZNF295-AS1Q8N0V1 137 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 LSM10Q969L4 123 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 EIF5A2Q9GZV4 153 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 PRELID3BQ9Y3B1 194 aa17.56■□□□□ 0.4
CCDC88B-203ENST00000359902 WDR1O75083 606 aa17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 FLI1Q01543 452 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 ACSF3Q4G176 576 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 ABHD14AQ9BUJ0 271 aa17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 CECR9P0C854 216 aa17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 PPP1CCP36873 323 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 ZNF585BQ52M93 769 aa17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 FIP1L1Q6UN15 594 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 KCNS2Q9ULS6 477 aa17.55■□□□□ 0.4
CCDC88B-203ENST00000359902 UMAD1C9J7I0 102 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 HOXA4Q00056 320 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 RNASE11Q8TAA1 199 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 CXXC4Q9H2H0 198 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 DKK4Q9UBT3 224 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 IGKV1-5P01602 117 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 Q6ZR03 302 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 DRAM1Q8N682 238 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 ZNF610Q8N9Z0 462 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 TAAR6Q96RI8 345 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 CACNG5Q9UF02 275 aa17.54■□□□□ 0.4
CCDC88B-203ENST00000359902 PRR14LQ5THK1 2151 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 TMEM30CPA0ZSE6 113 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 AHRRA9YTQ3 701 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 RAB40CQ96S21 281 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 FZR1Q9UM11 496 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 GTF3C1Q12789 2109 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 A0A1B0GV50 99 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 TXNL1O43396 289 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 TNFSF13O75888 250 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 IGLV1-44P01699 117 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 ZNF16P17020 682 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 KITLGP21583 273 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 FABP6P51161 128 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 RPL23AP62750 156 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 IGF2-ASQ6U949 168 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 LFNGQ8NES3 379 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 GNPNAT1Q96EK6 184 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 LIN7CQ9NUP9 197 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 KCNIP1Q9NZI2 227 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 ASPMQ8IZT6 3477 aa17.53■□□□□ 0.4
CCDC88B-203ENST00000359902 TIMM8AO60220 97 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 CEACAM4O75871 244 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 TUBG1P23258 451 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 PRAMEF6Q5VXH4 476 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 OR1L1Q8NH94 360 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 STARD4Q96DR4 205 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 ATP5SQ99766 215 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 ZNF71Q9NQZ8 489 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 TUBG2Q9NRH3 451 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 ZFHX4Q86UP3 3567 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 CACNA1GO43497 2377 aa17.52■□□□□ 0.4
CCDC88B-203ENST00000359902 KIAA2026Q5HYC2 2103 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 A0A1B0GW64 132 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 H3BP45 60 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 CGAP01215 116 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 CEACAM1P13688 526 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 OR3A1P47881 315 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 RUNX1Q01196 453 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 SLC35E4Q6ICL7 350 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 WDR82Q6UXN9 313 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 ETV3LQ6ZN32 361 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 ACP7Q6ZNF0 438 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 PBDC1Q9BVG4 233 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 BCL2L14Q9BZR8 327 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 OPN3Q9H1Y3 402 aaPredicted RBP17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 FBXO7Q9Y3I1 522 aa17.52■□□□□ 0.39
CCDC88B-203ENST00000359902 A6NLC8 198 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 C12orf77C9JDV5 145 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 GPR37O15354 613 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 CD200P41217 278 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 SULT1A1P50225 295 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 B2MP61769 119 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 CCL20P78556 96 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 AESQ08117 197 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 SPSB3Q6PJ21 355 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 STX12Q86Y82 276 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 GALMQ96C23 342 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 MSL2Q9HCI7 577 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 KLF2Q9Y5W3 355 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 WSB1Q9Y6I7 421 aa17.51■□□□□ 0.39
CCDC88B-203ENST00000359902 SAV1Q9H4B6 383 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 UFSP2Q9NUQ7 469 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 MLXQ9UH92 298 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 IGHV2OR16-5A0A0B4J2B6 119 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms